Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1296
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1007 - 23495941-23496486,23496933-23497094,23497184-234973...    31   1.2  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.2  
07_03_0846 - 21983581-21986055                                         29   2.7  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    29   3.6  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    28   6.2  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    28   6.2  
09_04_0407 + 17345382-17345579,17345711-17346235                       28   8.3  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   8.3  

>08_02_1007 -
           23495941-23496486,23496933-23497094,23497184-23497361,
           23497473-23497882
          Length = 431

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 318 TFGSCTRRAAGGAKLPSAGLCRTPLRPKPA 229
           T     +RA  GA+LP+   CRTP  P P+
Sbjct: 15  TVNPVVQRAVVGAQLPTTSPCRTPKSPPPS 44


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 235 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 101
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 93  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 242
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 298 PSGRWCEATIRGIMPNAS-KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 137
           P+    +++IRGI+P  S KA++SL +  + +L +    S   +Q   T+  S S
Sbjct: 75  PNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQVKATTSRSFS 129


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 282 AKLPSAGLC-RTPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 112
           A+LP   L  R P        + AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 426 AELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 592 YKEFLARG-ARKVTTGITGLWQPSVHSDVLFD 500
           YK F A G  RKV  GIT  + PS+  D+ FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 287 VVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAP 189
           + + YHP+  A     +S  S IR+ YAHC  P
Sbjct: 4   LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 244 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 71
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 70  TRASR 56
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,249,958
Number of Sequences: 37544
Number of extensions: 437253
Number of successful extensions: 1224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)