Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1296
(702 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 52 2e-06
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 31 4.0
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 31 4.0
AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein. 31 5.3
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein. 31 5.3
X13293-1|CAA31655.1| 700|Homo sapiens protein ( Human mRNA for ... 30 9.2
BC053555-1|AAH53555.1| 700|Homo sapiens v-myb myeloblastosis vi... 30 9.2
BC007585-1|AAH07585.1| 700|Homo sapiens v-myb myeloblastosis vi... 30 9.2
AL121886-2|CAC08392.1| 700|Homo sapiens v-myb myeloblastosis vi... 30 9.2
AK223482-1|BAD97202.1| 700|Homo sapiens MYB-related protein B v... 30 9.2
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +2
Query: 503 KKNVAMNAWLPQASYPCGNFSGTSC*K 583
K +VAMNAW PQASYPCGNFS TSC K
Sbjct: 11 KSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 294 AAGGAKLPSAGLCRTPLRPKPA*PNPARICSLWSPESRE 178
A G P++ C TP P P P PA +CS SPE R+
Sbjct: 56 AQPGTHFPTSN-C-TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 294 AAGGAKLPSAGLCRTPLRPKPA*PNPARICSLWSPESRE 178
A G P++ C TP P P P PA +CS SPE R+
Sbjct: 56 AQPGTHFPTSN-C-TPTPPTPVLPGPASLCSPASPELRQ 92
>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
Length = 1032
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -3
Query: 280 EATIRGIMPNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 119
E +GI+ + A +++E D T P ESGGS+ D S+ S +ET
Sbjct: 660 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 719
Query: 118 RSPFG 104
P G
Sbjct: 720 SEPLG 724
>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
Length = 1013
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -3
Query: 280 EATIRGIMPNASKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 119
E +GI+ + A +++E D T P ESGGS+ D S+ S +ET
Sbjct: 641 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 700
Query: 118 RSPFG 104
P G
Sbjct: 701 SEPLG 705
>X13293-1|CAA31655.1| 700|Homo sapiens protein ( Human mRNA for
B-myb gene. ).
Length = 700
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 385 LPY*WLVVAIVILLSTRGTAVSD-IWFMHSPSGRWCEATIRGIMPNASKAEASLAES 218
LPY W+V A +L+ G+++S+ + + S WC+ + + +P AE S+ S
Sbjct: 288 LPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLS-KFDLPEEPSAEDSINNS 343
>BC053555-1|AAH53555.1| 700|Homo sapiens v-myb myeloblastosis viral
oncogene homolog (avian)-like 2 protein.
Length = 700
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 385 LPY*WLVVAIVILLSTRGTAVSD-IWFMHSPSGRWCEATIRGIMPNASKAEASLAES 218
LPY W+V A +L+ G+++S+ + + S WC+ + + +P AE S+ S
Sbjct: 288 LPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLS-KFDLPEEPSAEDSINNS 343
>BC007585-1|AAH07585.1| 700|Homo sapiens v-myb myeloblastosis viral
oncogene homolog (avian)-like 2 protein.
Length = 700
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 385 LPY*WLVVAIVILLSTRGTAVSD-IWFMHSPSGRWCEATIRGIMPNASKAEASLAES 218
LPY W+V A +L+ G+++S+ + + S WC+ + + +P AE S+ S
Sbjct: 288 LPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLS-KFDLPEEPSAEDSINNS 343
>AL121886-2|CAC08392.1| 700|Homo sapiens v-myb myeloblastosis viral
oncogene homolog (avian)-like 2 protein.
Length = 700
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 385 LPY*WLVVAIVILLSTRGTAVSD-IWFMHSPSGRWCEATIRGIMPNASKAEASLAES 218
LPY W+V A +L+ G+++S+ + + S WC+ + + +P AE S+ S
Sbjct: 288 LPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLS-KFDLPEEPSAEDSINNS 343
>AK223482-1|BAD97202.1| 700|Homo sapiens MYB-related protein B
variant protein.
Length = 700
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 385 LPY*WLVVAIVILLSTRGTAVSD-IWFMHSPSGRWCEATIRGIMPNASKAEASLAES 218
LPY W+V A +L+ G+++S+ + + S WC+ + + +P AE S+ S
Sbjct: 288 LPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLS-KFDLPEEPSAEDSINNS 343
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,609,297
Number of Sequences: 237096
Number of extensions: 2312840
Number of successful extensions: 5304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5304
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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