Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1295
         (603 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55422 Cluster: PREDICTED: similar to CG8843-PA;...    33   6.9  
UniRef50_UPI000049A2B9 Cluster: hypothetical protein 104.t00031;...    32   9.1  

>UniRef50_UPI0000D55422 Cluster: PREDICTED: similar to CG8843-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG8843-PA - Tribolium castaneum
          Length = 895

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = -2

Query: 224 IKIFNKTCINYFIQFILNVHFKCSLCIPLFLKSLLPKIFF*IA*NLHKLPTPISWFSKSG 45
           I+ + K CIN     +++VH + +      L+S+LP++   IA  L++L + +  FSK G
Sbjct: 764 IRPYAKECINN----VIHVHSEVNSISSSLLESVLPQVVLTIAEELYRLMSCVQKFSKGG 819

Query: 44  S 42
           +
Sbjct: 820 A 820


>UniRef50_UPI000049A2B9 Cluster: hypothetical protein 104.t00031;
           n=6; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 104.t00031 - Entamoeba histolytica HM-1:IMSS
          Length = 244

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 248 FYILNFISFL*KINVRVQIIYMDELVAYGAVGNPASRSLCTSQCYQRLYCIVSRENIIKM 427
           F  +NFI+ + + N+R  II  D+     +V          + CY+  YC +S + II  
Sbjct: 100 FVDINFINHIDQFNIRKVIIEFDKQEILESVIKNKKLLKRITFCYKECYCTISNDGIIHN 159

Query: 428 CPLTN 442
             LT+
Sbjct: 160 KRLTD 164


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,139,976
Number of Sequences: 1657284
Number of extensions: 10826662
Number of successful extensions: 19515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19511
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)