Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1295
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    27   1.6  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.5  

>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 200 INYFIQFILNVHFKCSLCIPLFLKSLLPKIFF 105
           +++FI F  +  F  SL + L  KS+L K+FF
Sbjct: 11  LSFFISFTFSSIFFSSLILFLVYKSVLSKLFF 42


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 169 FISSVHYVFLFF*SRCCQKYFSKSHKTFT 83
           F +++  V L F S CC+  ++ ++ TFT
Sbjct: 24  FSNAIRIVLLPFSSNCCRNSYTVNNGTFT 52


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 188 IQFILNVHFKCSLCIPLFLKSLLP 117
           I FI NV F   LC  + ++++LP
Sbjct: 571 IYFIFNVPFPVFLCYDILVETILP 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,437
Number of Sequences: 5004
Number of extensions: 51576
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)