Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1295
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.7  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             27   8.8  

>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 126  VVAKNIFLNRIKPSQATHPYFVV 58
            V+AKN+F N + PS   H   VV
Sbjct: 3213 VIAKNLFQNSVTPSSVAHATIVV 3235


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 192 LHSIYFKCSFQVFIMYSSFFKVVVAKNIFLNRIKPSQAT 76
           L+ + F CSF VFI+ S  + + V++   ++R  P + T
Sbjct: 489 LNQLTFVCSFPVFIL-SFLWSISVSQVFLISRFGPGRTT 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,016
Number of Sequences: 59808
Number of extensions: 352675
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)