Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1295
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical...    30   1.5  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical
           protein Y113G7A.10 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 310 HGRISSLWSGRESCFAFPLH*SVLPTSILHCF 405
           +G  S+ W G  S FA PL   +   S  HCF
Sbjct: 71  NGTHSATWQGHVSSFALPLECHINSKSYTHCF 102


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
           protein ZK783.1 protein.
          Length = 2585

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 256 FEFHIIFVKNKCTRTD-HIHGRISSLWSGRESCFAFP-LH*SVLP 384
           F+   +  ++    TD HIH  +SSL  G++ CF  P +H  V P
Sbjct: 38  FDTSTVICQHSSDPTDLHIHN-MSSLCDGKQDCFVNPAMHDEVFP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,597
Number of Sequences: 27780
Number of extensions: 282883
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)