Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1295
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 351  LRVPFALVSVTNVYTALFLEKILLKCV 431
            +RVP  + S  + +TA + E + L C+
Sbjct: 1273 VRVPAKIASFDDKFTATYKEDVKLPCL 1299


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 461 LGKIRKLLQVILEHLTNE 514
           LG + K LQV  +HL N+
Sbjct: 113 LGNLTKHLQVFRDHLINQ 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 159 LEMNI*NKLNEVINACLVKN 218
           LE++   K N V NAC++KN
Sbjct: 470 LEISTRPKSNTVENACVLKN 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,831
Number of Sequences: 438
Number of extensions: 3553
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)