Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1289
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.45 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.2  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.2  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   9.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.8  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 541 WINEIPTVPIYI 506
           W+NEIPT+P+ I
Sbjct: 321 WLNEIPTMPVSI 332


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 404 PLMSPYNARLESSSTGSS--FPADSPKPVPLAVVSLDVDR 517
           PL+ P   R  S+++ +S   P+ SP+P  +  +SL V R
Sbjct: 197 PLLVPIPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 210 GSRGSFKRRRAFPPRTTLHAWNETPCARRYYRP 308
           G+ G  +RR     R+ L A+  T     +Y+P
Sbjct: 170 GTTGKLRRRSTAASRSRLAAFKRTIALGAFYQP 202


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 372 SSLKNHYFHCFITYSVGRK 316
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 297 YYRPRTASAQPSK 335
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 147 ALFFDRCTAPVKLPAWQC 200
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 147 ALFFDRCTAPVKLPAWQC 200
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 568 RHLISDAHEWINEI 527
           RHLI    +W NE+
Sbjct: 91  RHLIDHKRDWWNEL 104


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = -1

Query: 229  LKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 110
            L  PR P   H  +     A   S + +G  R     +KP
Sbjct: 916  LTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRKP 955


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,400
Number of Sequences: 336
Number of extensions: 3713
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)