Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1289
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 2.7
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.6
01_06_0456 + 29521282-29522064 29 3.6
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 4.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 6.3
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 28 6.3
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 559 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 660
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 252 RTTLHAWNETPCARRYY 302
+TT AW ETPCA R++
Sbjct: 559 KTTTEAWVETPCAHRFH 575
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 377 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 502
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 189 AWQC--PRTGSRGSFKRRRAFPPRTT 260
AW+C P +G+RG +RRR P TT
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTT 37
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 LLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVPP 174
L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 580 LMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAPN 635
Query: 175 QSNSPPGSVLE 207
+ PG L+
Sbjct: 636 RGGKAPGDSLD 646
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 248 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 159
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 169 PPQSNSPPGSVLEPDHAGVLNGDE 240
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -2
Query: 666 FLPSALNVNVKKFKQARVNGGSNYDSLKVAKCLVI*LVTRMNGLTRFPLSLSTSSETTAK 487
FLPS L + +++ + + + + A L G++ S STSS T A
Sbjct: 24 FLPSLLPIRRRRWPTPKATATAAFPPRRPAPLSANNLPLHTPGVSE-TTSTSTSSTTFAS 82
Query: 486 GTGLGESAGKEDPV 445
GT G AG EDP+
Sbjct: 83 GTFRG--AGGEDPL 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,792,557
Number of Sequences: 37544
Number of extensions: 475752
Number of successful extensions: 1580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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