Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1289
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    28   5.7  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    28   5.7  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical protein
            W02B8.2 protein.
          Length = 1256

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 190  PGSVLEPDHAGVLNGDERFRHVPLCTLGTKHRAPADIIDRAPLPPNR 330
            P S +E   AG +   + F +VPL      H++P+D+  R  +PP R
Sbjct: 1080 PVSFIESTPAGFIFASDTFYYVPL-----DHQSPSDVSARKLMPPRR 1121


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 362  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 481
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 362  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 481
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 220 GVLNGDERFRHVPLCTLGTKHRAPADIIDR--APLPPNRVSNETMKVVVFQRRSRE 381
           G + GDE  RH  + + GTKH AP     R  AP      ++E +KV    R  R+
Sbjct: 141 GFVAGDEGTRHAVVDSEGTKHGAPDTEGTRHDAPDLEGTENSEGVKVTTKTRSGRD 196


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 220 GVLNGDERFRHVPLCTLGTKHRAPADIIDR--APLPPNRVSNETMKVVVFQRRSRE 381
           G + GDE  RH  + + GTKH AP     R  AP      ++E +KV    R  R+
Sbjct: 192 GFVAGDEGTRHAVVDSEGTKHGAPDTEGTRHDAPDLEGTENSEGVKVTTKTRSGRD 247


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +1

Query: 268 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 402
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/63 (36%), Positives = 30/63 (47%)
 Frame = +2

Query: 371 DRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDVDRDSGNLVNPFMR 550
           D A+ SP YAT  +   +AR   SST SSF     +       S+D D     L++PF  
Sbjct: 84  DHARLSPNYATSDLGS-SARSSFSSTTSSFLTYRDR-------SVDFDEAGKELISPFDC 135

Query: 551 VTN 559
            TN
Sbjct: 136 DTN 138


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 365 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 481
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 359 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDVDR 517
           F+S+  A RS +   P+MS     + +++T +  PA S K   +     D  R
Sbjct: 46  FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIKVADILEEDADAIR 98


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = -2

Query: 507 SSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFITYS 328
           S  TT+    + +S+  ++   LD   AL G +R VA + DR  R SLKN     F+TY+
Sbjct: 34  SLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLTYT 89

Query: 327 VGRKRCAVDNIGGRTVF 277
                 +  NI  R+ F
Sbjct: 90  PVILNASTTNIVTRSKF 106


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/71 (26%), Positives = 26/71 (36%)
 Frame = +1

Query: 151 YSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVPLCTLGTKHRAPADIIDRAPLPPNR 330
           Y    +PP +  PP  V +    GV  G   F   P+C  G       D   +AP    +
Sbjct: 323 YLFCYIPPNNEHPPSCVSKVRRNGVCRG---FEDYPICYWGQCVDGRCDETVKAPKRLEK 379

Query: 331 VSNETMKVVVF 363
                 K+V F
Sbjct: 380 FKKFEKKIVPF 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,958
Number of Sequences: 27780
Number of extensions: 360578
Number of successful extensions: 1085
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)