Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1289
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.74
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 31 0.98
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 30 1.3
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.7
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 29 2.3
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 3.0
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 28 6.9
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 6.9
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 27 9.2
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 9.2
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 9.2
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 9.2
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 9.2
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 27 9.2
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 27 9.2
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 268 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 414
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 30.7 bits (66), Expect = 0.98
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = +2
Query: 431 LESSSTGSSFPADSPKPVPLAVVSLDVDRDSGNLVNPFMRVTN*MTRHLATLRES*LLPP 610
L ++ FP L V L +R SG + + +R++ T ++ S +PP
Sbjct: 116 LNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPP 175
Query: 611 FTRACLNFFTLTFRALGRNHIASTPA 688
+A L FF ++ L HI T A
Sbjct: 176 LNQATLRFFNVSNNQLS-GHIPPTQA 200
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 398 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDV 511
A+ + SP+N+ L S SS +D P PL +VS D+
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSNDI 142
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 583 GSQMPRHLISDAHEWINEIPTVPIYI*RNHSQGNGLGRISGER 455
G +P + +SD + INE+ P I + + NGL + G+R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 434 ESSSTGSSFPADSPKPVPLAVVSLDVDRDSGN 529
+ + G+S PA +P P+PL ++ D D D +
Sbjct: 264 DDKAKGNSVPATAPTPIPLVSINHDDDDDESD 295
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 129 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 16
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 530 DSHCPYLHLAKPQPRERAWENQRGKKT 450
DS P++H+A P P ++A +N G T
Sbjct: 218 DSKKPHVHVATPHPSKQAGKNSGGGST 244
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 304 DRAPLPPNRVSNETMKVVVFQRRSRET 384
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 4 LLKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 165
+L L+T S+ + F + +DQA C P + S E+ H R +TD
Sbjct: 63 ILVLLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 313 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 423
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 313 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 423
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 386 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 493
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 265 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 360
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +1
Query: 178 SNSPPGSVLEPDHAGVLNGDERFRHVPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 357
S++ P VL DH V + VPL + + +P + AP P NR ET + +
Sbjct: 37 SSTNPNRVL--DHISVSESTD----VPLIIIKNSNSSPQN---NAPKPQNREGAETEEPI 87
Query: 358 VFQRRSRETISHLCYTSHVSLQCQTRV 438
R +T S + +L+C RV
Sbjct: 88 KENRGGTKTESSMNQNRGETLRCIQRV 114
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 259 LCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 390
LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 56 LCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,652
Number of Sequences: 28952
Number of extensions: 346692
Number of successful extensions: 1048
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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