Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1288
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       126   2e-29
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       126   2e-29
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        89   3e-18
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  126 bits (304), Expect = 2e-29
 Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 3/123 (2%)
 Frame = +3

Query: 252 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 425
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 426 XXXXTATDVIHS*TIPSLGIKVDANPGR*IKQTSLLIDLE-FFFGQCSEICGANHSFIPI 602
               TA DVIHS  +P+L +K+DA PGR + QT   I     F+GQCSEICGANHSF+PI
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVPGR-LNQTGFFIKRPGVFYGQCSEICGANHSFMPI 219

Query: 603 VIE 611
           VIE
Sbjct: 220 VIE 222



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 40  FFHDHTXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIA 207
           FFHD                       K   R+L++G ++E+I TIIPA  LIFIA
Sbjct: 30  FFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIA 85


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  126 bits (304), Expect = 2e-29
 Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 3/123 (2%)
 Frame = +3

Query: 252 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 425
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 426 XXXXTATDVIHS*TIPSLGIKVDANPGR*IKQTSLLIDLE-FFFGQCSEICGANHSFIPI 602
               TA DVIHS  +P+L +K+DA PGR + QT   I     F+GQCSEICGANHSF+PI
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVPGR-LNQTGFFIKRPGVFYGQCSEICGANHSFMPI 219

Query: 603 VIE 611
           VIE
Sbjct: 220 VIE 222



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 40  FFHDHTXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIA 207
           FFHD                       K   R+L++G ++E+I TIIPA  LIFIA
Sbjct: 30  FFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIA 85


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
 Frame = +3

Query: 252 PLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXX 425
           P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD           
Sbjct: 101 PALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHV 160

Query: 426 XXXXTATDVIHS*TIPSLGIKVDANPGR*IKQTSLLIDLEFFF 554
               TA DVIHS  +P+L +K+DA PGR + QT   I   + F
Sbjct: 161 RVLITAADVIHSFAVPALAVKMDAVPGR-LNQTGFFIKKTWSF 202



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 40  FFHDHTXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIA 207
           FFHD                       K   R+L++G ++E+I TIIPA  LIFIA
Sbjct: 30  FFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIA 85



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 509 LNQTNFFINRPGIFFWSMFRNL 574
           LNQT FFI +   F  SMFR+L
Sbjct: 189 LNQTGFFIKKTWSFLRSMFRDL 210


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 399 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFSI 286
           YD +H    IHY   H+  ++   IQYY   NIH ++I
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYNI 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,826
Number of Sequences: 59808
Number of extensions: 190236
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)