Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1285
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.25
06_01_0350 + 2534422-2535615 31 0.57
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.0
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.3
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 1.7
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 1.7
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 2.3
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 28 3.1
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 28 4.0
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 27 5.3
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 27 5.3
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 27 5.3
06_01_1013 - 7931756-7935109 27 9.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 9.3
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 9.3
02_02_0590 - 11894721-11895188,11895684-11895851 27 9.3
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 445 HRPHPLPVETRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 266
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 161 PWNSNAQAEKKTLPGPLGGVFRP 93
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 18 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 182
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 436 HPLPVETRHAPVLRANPYSEVTDPICRLPL 347
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 448 RHRPHPLPVETRHAPVLRANP 386
+++ H +PV+ H+PVL+ NP
Sbjct: 336 KNQDHSVPVQKNHSPVLKTNP 356
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 259 SLXEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 86
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 85 LPRRTLVFKDEGTI 44
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 442 RPHPLPVETRHAPVLRANPYSEVTDP 365
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 421 ETRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 290
E RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 424 VETRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 314
+ET A L+++P S+ R+PLP R+EAL+
Sbjct: 110 LETIIARNLKSSPLSQQVTRALRIPLPRTLKRIEALN 146
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 430 LPVETRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 317
+P + + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 350 VTYIILSTRGSSPWRPAADMGTNRRDISTYIP 255
V + +L+ RG P +PAA RRD ++P
Sbjct: 26 VLHAVLAVRGPRPLQPAASASFRRRDRWFHLP 57
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 322 ALHLGDLLRIWVRTGATSPRTSLXEFSRSAESIRTPPQMRCSSRSEP 182
A H G I VRT + TS A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 291 GYEPARHLHVHPYXNFQGPQRVSGHR 214
G+EP R + +HP + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 161 PWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*N-GSAAGFRNRNR 3
P + A+ +++T P G + W+TPSN R R G + G + G R+R+R
Sbjct: 1578 PRYTPAKTKQETEPMGTGFDRQETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSR 1631
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 21 PGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRYGS-ERE 197
PGSG V +IVP V G W R + F F + +E +GS E E
Sbjct: 21 PGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEEEHGSGEEE 76
Query: 198 EH 203
EH
Sbjct: 77 EH 78
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 45 IVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 143
++ S + V GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,124
Number of Sequences: 37544
Number of extensions: 316344
Number of successful extensions: 1059
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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