Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1285
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 31 0.36
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 1.9
At5g42370.1 68418.m05159 expressed protein 29 1.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 1.9
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 2.6
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 28 3.4
At5g22390.1 68418.m02612 expressed protein 27 4.5
At5g61910.3 68418.m07772 expressed protein 27 5.9
At5g61910.2 68418.m07771 expressed protein 27 5.9
At5g61910.1 68418.m07770 expressed protein 27 5.9
At2g05210.1 68415.m00549 expressed protein 27 5.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 5.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 5.9
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 27 7.8
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa... 27 7.8
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa... 27 7.8
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 7.8
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 450 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFADFRYL 343
PG + FP KP+ P P +P+L + F D R L
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGDDRRL 128
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 237 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 103
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 176 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 66
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 39 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 170
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 232 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 134
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 213 GGVRILSADLENSXRDVRGDVAPVRTH 293
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 111 ERSGKSFLFCLSVRVPWNPIEG 176
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At5g61910.3 68418.m07772 expressed protein
Length = 742
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 268 PRTSLXEFSR-SAESIRTPPQMRCSSRSEPYLPS 170
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 253 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 286
>At5g61910.2 68418.m07771 expressed protein
Length = 738
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 268 PRTSLXEFSR-SAESIRTPPQMRCSSRSEPYLPS 170
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At5g61910.1 68418.m07770 expressed protein
Length = 738
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 268 PRTSLXEFSR-SAESIRTPPQMRCSSRSEPYLPS 170
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 232 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 77
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 159 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 40
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 159 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 40
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 238 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 89
S S PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 379
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 377 SYGSNLPTSVTYIILSTRGSSP 312
++ S PT VTY++ + R SSP
Sbjct: 164 AFASTFPTVVTYVVDTPRSSSP 185
>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 379
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 377 SYGSNLPTSVTYIILSTRGSSP 312
++ S PT VTY++ + R SSP
Sbjct: 164 AFASTFPTVVTYVVDTPRSSSP 185
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 193 RSEPYLPSIGFHGTRTLRQKRK 128
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,873,225
Number of Sequences: 28952
Number of extensions: 231560
Number of successful extensions: 690
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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