Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1284
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 GWDGLGLISYCLVIYYQNLKSYNAGILTALSNRI 413
           G +GLG+ +    +Y Q+L   +   LTALS  +
Sbjct: 3   GEEGLGVTTGQPNLYKQDLSKLDVSKLTALSREV 36


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 507 HNHSS*NQNKKYNFNFHN 454
           HN+++ N N   N+N++N
Sbjct: 91  HNNNNYNNNNYNNYNYNN 108


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 507 HNHSS*NQNKKYNFNFHN 454
           +N++  N N KYN+N +N
Sbjct: 320 NNYNYNNNNYKYNYNNYN 337


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 507 HNHSS*NQNKKYNFNFHN 454
           +N+   N N KYN+N +N
Sbjct: 93  NNNYKYNYNNKYNYNNNN 110


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 504 NHSS*NQNKKYNFNFHN 454
           N++  N N KYN+N +N
Sbjct: 86  NNTIHNNNYKYNYNNNN 102


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 504 NHSS*NQNKKYNFNFHN 454
           N++  N N KYN+N +N
Sbjct: 86  NNTIHNNNYKYNYNNNN 102


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 504 NHSS*NQNKKYNFNFHN 454
           N++  N N KYN+N +N
Sbjct: 87  NNTIHNNNYKYNYNNNN 103


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 504 NHSS*NQNKKYNFNFHN 454
           N++  N N KYN+N +N
Sbjct: 87  NNTIHNNNYKYNYNNNN 103


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 504 NHSS*NQNKKYNFNFHN 454
           N++  N N KYN+N +N
Sbjct: 87  NNTIHNNNYKYNYNNNN 103


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 504 NHSS*NQNKKYNFNFHN 454
           N++  N N KYN+N +N
Sbjct: 87  NNTIHNNNYKYNYNNNN 103


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 590 AIAAPTPVSALVHSSTLVTAG 652
           A A PTP S  V S+   TAG
Sbjct: 48  AAATPTPPSVPVGSAVAGTAG 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,640
Number of Sequences: 438
Number of extensions: 1146
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)