Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1283
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 31 0.23
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.69
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.1
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 3.7
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 26 4.8
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 6.4
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.4
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 6.4
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 8.5
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 8.5
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 8.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 8.5
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 437 SGCGRCRVWSMFVRYVRFSELVF*IMRPQKLYIF 538
+GCG+ VW +VR+V F E LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.69
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 620 ARKIRGRPENAGPDPVRNVRRFSRV 546
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 634 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYLKY*LAKTNITHE 470
+ D +LG + A + +V + S+ D +E H+KY+Q + L+ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 164 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 289
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 158 ERSGRKENSSRTSRRR---LQATLGYPVEHSFLKTRERLLKRFRCRVPE*EPDSF 3
+R +E + RR+ L+ Y KT+++ LKR R + E PD F
Sbjct: 10 QRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPDEF 64
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 277 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 146
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 216 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 79
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 698 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 552
SS+++ E S + +KP+R TA K + + ++ GP+ R + F+
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 474 TNIDQTRHRPHPLPVQTRHAPV 409
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 362 FPYLHYSID*RLFTLETCCGYGYEPARHL 276
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 263 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 102
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -3
Query: 444 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 280
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 279 -SPRTSLT*ISRSAESIRTP 223
SP+ + I + +SI TP
Sbjct: 314 VSPKYT---IQQYVQSIGTP 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,475
Number of Sequences: 5004
Number of extensions: 67271
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -