Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1282
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.67 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    28   1.6  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.7  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.3  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    22   7.7  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 375 SGCGRCRVWSMFVRYVRFSE 434
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = -2

Query: 636 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLR 457
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R    F       + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 456 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 367
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 246 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 118
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 154 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 17
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 421 FVLAS*YFNIMRPQKLYIFNMTLAKIVLRSD 513
           F + S ++  ++P  L + +M++A IVLR+D
Sbjct: 255 FPIQSTFYKDVKPFDLKLLHMSVASIVLRND 285


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 468 QFLRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKP 361
           QF+  H  ++LTR  E     S  P T      S P
Sbjct: 38  QFINHHMQQLLTRPVEGTHSASVHPSTSSTSHISSP 73



 Score = 21.4 bits (43), Expect(2) = 7.7
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = -2

Query: 354 PRSSEPILIPKLRIQFADFPYLHYSID*RLFTLGPAADMGTNRRDISTY 208
           PRS        +  Q  + PY H S     F+ G  A +  N  +  T+
Sbjct: 109 PRSVSMQQSQDVHFQNTEIPYYHRSPSSDSFSPGVVASVNPNSNNSPTF 157


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 412 TNIDQTRHRPHPLPVQTRHAPV 347
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,177
Number of Sequences: 5004
Number of extensions: 66113
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)