Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1282
         (724 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY102684-1|AAM27513.1|  872|Drosophila melanogaster LD24134p pro...    32   0.91 
AE014297-1234|AAF54579.2|  872|Drosophila melanogaster CG6621-PA...    32   0.91 
AY075453-1|AAL68266.1|  589|Drosophila melanogaster RE11411p pro...    31   1.6  
AE013599-1106|AAM68760.2|  589|Drosophila melanogaster CG18377-P...    31   1.6  
AE013599-1105|AAF58791.3|  589|Drosophila melanogaster CG18377-P...    31   1.6  
X55393-1|CAA39067.1|  659|Drosophila melanogaster S59 protein pr...    30   2.8  
AE014297-3018|AAF55901.3|  659|Drosophila melanogaster CG6534-PA...    30   2.8  

>AY102684-1|AAM27513.1|  872|Drosophila melanogaster LD24134p
           protein.
          Length = 872

 Score = 31.9 bits (69), Expect = 0.91
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 623 PLNGGRTESCRSRTK-RNRHDLRLGRSAEGRRTRVRIQSER 504
           PL GGR+ S RSR++ R+R   R      GR TR  ++S R
Sbjct: 674 PLKGGRSSSSRSRSRSRSRSRSRSRNRRLGRSTRSSLRSRR 714


>AE014297-1234|AAF54579.2|  872|Drosophila melanogaster CG6621-PA
           protein.
          Length = 872

 Score = 31.9 bits (69), Expect = 0.91
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 623 PLNGGRTESCRSRTK-RNRHDLRLGRSAEGRRTRVRIQSER 504
           PL GGR+ S RSR++ R+R   R      GR TR  ++S R
Sbjct: 674 PLKGGRSSSSRSRSRSRSRSRSRSRNRRLGRSTRSSLRSRR 714


>AY075453-1|AAL68266.1|  589|Drosophila melanogaster RE11411p
           protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 412 TNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTL 284
           T++  TR     LP +T  +P     PYSEV  P    PLP +
Sbjct: 73  TSVATTRTTASSLPAETTSSPAAAVRPYSEVPGP---YPLPLI 112


>AE013599-1106|AAM68760.2|  589|Drosophila melanogaster CG18377-PD,
           isoform D protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 412 TNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTL 284
           T++  TR     LP +T  +P     PYSEV  P    PLP +
Sbjct: 73  TSVATTRTTASSLPAETTSSPAAAVRPYSEVPGP---YPLPLI 112


>AE013599-1105|AAF58791.3|  589|Drosophila melanogaster CG18377-PA,
           isoform A protein.
          Length = 589

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 412 TNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTL 284
           T++  TR     LP +T  +P     PYSEV  P    PLP +
Sbjct: 73  TSVATTRTTASSLPAETTSSPAAAVRPYSEVPGP---YPLPLI 112


>X55393-1|CAA39067.1|  659|Drosophila melanogaster S59 protein
           protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
 Frame = -1

Query: 406 IDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGTCCGYGYE- 230
           ++  RH   P P+Q  HA +L+ +P+              + +     H      + ++ 
Sbjct: 162 LNAVRHLARPEPLQHPHAALLQQHPHLLQNPQFLAAAQQHMHHHQHQHHQHPAHPHSHQH 221

Query: 229 ----PARHLHVHPSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSI 113
               P  H H HPS  F   A   S   PP    S  S P  P++
Sbjct: 222 PHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPPTSPAM 266


>AE014297-3018|AAF55901.3|  659|Drosophila melanogaster CG6534-PA
           protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
 Frame = -1

Query: 406 IDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGTCCGYGYE- 230
           ++  RH   P P+Q  HA +L+ +P+              + +     H      + ++ 
Sbjct: 162 LNAVRHLARPEPLQHPHAALLQQHPHLLQNPQFLAAAQQHMHHHQHQHHQHPAHPHSHQH 221

Query: 229 ----PARHLHVHPSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSI 113
               P  H H HPS  F   A   S   PP    S  S P  P++
Sbjct: 222 PHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPPTSPAM 266


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,585,607
Number of Sequences: 53049
Number of extensions: 802362
Number of successful extensions: 2441
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)