Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1282
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          26   0.41 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          26   0.41 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          26   0.41 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          26   0.41 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          26   0.41 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    26   0.41 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.9  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR +  RH+ R     +G R+  R +S
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRS 258


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 608 RTESCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
           RT SC SR + +RH+       +G R+  R +S
Sbjct: 226 RTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRS 258


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 374 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 472
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 374 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 472
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 136 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 53
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 67  PDLSAASSGHFGLPRRTLLFK 5
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 621 VERRSYRIVPIAHETKPTRLTARKIRGRPEN 529
           VE + Y+ V I+  T+P+  T   +   P N
Sbjct: 183 VEEQRYKQVEISQMTEPSSSTKSYVLEGPRN 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,882
Number of Sequences: 438
Number of extensions: 5337
Number of successful extensions: 22
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)