Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1280
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 31 0.23
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.70
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.8
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.9
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc... 26 6.5
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 6.5
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 8.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 8.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 8.6
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 426 SGCGRCRVWSMFVRYVRFSELVF*YNAAQKLYIF 527
+GCG+ VW +VR+V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 609 ARKIRGRPENAGPDPVRNVRRFSRV 535
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 205 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSCHFGLPRRT 68
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 623 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLSRIILKY*LAKTNITHE 459
+ D +LG + A + +V + S+ D +E H+KY+Q + L+ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 280 TGATSPRTSSPEFSRSAESIRTPPQMRCSS--RSEPYLPSIGF 158
+ ++S +SSP RS+ +TPP S + P+ P +GF
Sbjct: 3 SSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFPHAPPLGF 45
>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 290
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = -1
Query: 267 LHVHPHLNFQGPQRVSGHRRKCGALRVP---NHISLL*DSMELERSGRKENSSRTSRRRL 97
LH H+N Q R S + C +++P +LL D +++ + R
Sbjct: 140 LHGRSHINEQWSMR-SYVSKNCIQMKIPASNQRKTLLRDVLKIFDEPNLHIGLKAERMHH 198
Query: 96 HATLG--YPVEHSFLKTRERLLKRFR 25
+G Y + FLKT+E +L ++R
Sbjct: 199 FECIGNLYLIGPKFLKTKEAVLNQYR 224
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 687 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 541
SS+++ E S + +KP+R TA K + + ++ GP+ R + F+
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 463 TNIDQTRHRPHPLPVQTRHAPV 398
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 351 FPYLHYSID*RLFTLETCCGYGYEPARHL 265
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 210 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLHATLGYPVEHSFLK 55
+K + +P HI LL +E E+S + + RR + T Y EH LK
Sbjct: 1037 QKISEMNIPGHIHLL-RELEEEKSNTQRKIAHFESRRRYLTNLY--EHIVLK 1085
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,756
Number of Sequences: 5004
Number of extensions: 67546
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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