Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1280
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0098 + 25560158-25560925                                         33   0.24 
06_01_0350 + 2534422-2535615                                           32   0.42 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.96 
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   2.9  
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    29   3.9  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    29   3.9  
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226...    29   5.1  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   5.1  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   5.1  
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443...    29   5.1  
11_05_0087 + 18970741-18972702                                         28   6.8  
07_03_0078 - 13147741-13148913                                         28   6.8  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   9.0  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    28   9.0  
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    28   9.0  
10_07_0134 + 13289641-13290216,13290435-13290914                       28   9.0  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   9.0  
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628     28   9.0  
03_05_0565 + 25667391-25667696                                         28   9.0  

>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -3

Query: 442 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 263
           HRP P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90

Query: 262 RTSSP 248
               P
Sbjct: 91  SQRPP 95


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 158 PWNSNAQAEKKTLPGPLGGVFMP 90
           PW S+A+ E+K LP PL  +F+P
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLP 64


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 463 TNIDQTRH------RPHPLPVQTRHAPVLRANP 383
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 433 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 344
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 362 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILI*CGSKTV 520
           W R  G R+G ++       G+  R VPG+V  R L +  +V  ++  G KTV
Sbjct: 84  WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -3

Query: 256 SSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSCHFG 83
           S  E SR++  + I+  P M  S   +  +   GFHG   L+   KL PDL +    HF 
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231

Query: 82  LPRRTLVFKDEGTI 41
                LVF   G I
Sbjct: 232 PATNQLVFPGRGAI 245


>07_03_1599 -
           28022196-28022218,28022355-28022408,28022545-28022620,
           28022727-28022758,28022921-28023016,28023105-28023206,
           28023291-28023366
          Length = 152

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
 Frame = +3

Query: 48  PSSLKTSVRRGNPKWHEDAAERSGKSFLFCLSVRVPWNPIEGRYGSEREEHRICGGVRIL 227
           P+S+  SV    P  H       G +   C+S    +NP    +G+ ++E+R  G +  +
Sbjct: 27  PTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNI 86

Query: 228 SADLEN-SGEDVRGDVAPVRTHIXXXXXXXXXXXXXNNVGKGSRQIGSVTSE*G 386
           +A  +  +  +V     P+                 +++GKG  ++   T   G
Sbjct: 87  TAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAG 140


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 427 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 314
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 439 RPHPLPVQTRHAPVLRANPYSEVTDP 362
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>01_07_0257 -
           42343493-42343528,42344215-42344271,42344272-42344316,
           42344374-42344518,42344606-42344733,42344939-42345044,
           42345113-42345189,42345264-42345361,42345945-42346058,
           42346154-42346294,42346418-42346502,42346721-42346849
          Length = 386

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 303 TCCGYGYEPARHLHVHPHLNFQGP 232
           +CCG+     R+  + PHLN  GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 144 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 263
           VR P  P+ GR+G  RE  R    +    +   + G+ VR
Sbjct: 56  VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 569 SGPAFSGLPRIFLAVSRVGFVSCAI 643
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 465 ARTSTRPGTGRIRFPSKPDTPRSSE 391
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 481 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 308
           +K +   N+D    RP P PV       LRA PY     P  +  + L  +   L ++++
Sbjct: 1   MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60

Query: 307 GDLLR 293
            D  R
Sbjct: 61  NDCPR 65


>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 169 SIGFHGTRTLRQKRKLFPDLSAASSCHFG 83
           +IG HG   L+QK ++  D+S  + C+ G
Sbjct: 280 AIGSHGAEFLKQKLEVSKDISVLTHCNTG 308


>10_07_0134 + 13289641-13290216,13290435-13290914
          Length = 351

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -3

Query: 589 AGERGSGSSPKRKTIFASVILNIYSF*AALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTR 410
           A   G GSS +++     + LN+    A+    +N  + +   N+D +R  P P P    
Sbjct: 201 AAAGGGGSSCRQEAASELINLNVKETEASC---SNRSENSSEINLDISRPAPPPPPPPAN 257

Query: 409 HAPVLRANPY 380
            +PV R  P+
Sbjct: 258 ESPVNRGIPF 267


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 453 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 367
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
          Length = 132

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 319 ALHLGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 179
           A H G    I VRT   +  TS       A SI TP  + CS+ + P
Sbjct: 38  ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84


>03_05_0565 + 25667391-25667696
          Length = 101

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 295 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 149
           RI++   A  PR  SP  +R A++         S+ +EP  P    HGT
Sbjct: 40  RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,230,404
Number of Sequences: 37544
Number of extensions: 507260
Number of successful extensions: 1843
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)