Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1280
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   2.4  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.3  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.7  
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P...    28   7.5  
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea...    28   7.5  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   7.5  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   7.5  
At5g22390.1 68418.m02612 expressed protein                             27   9.9  
At5g16770.2 68418.m01964 myb family transcription factor (MYB9) ...    27   9.9  
At5g16770.1 68418.m01963 myb family transcription factor (MYB9) ...    27   9.9  
At3g19190.1 68416.m02436 expressed protein                             27   9.9  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 447 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 352
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 234 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 100
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 229 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 131
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g56500.1 68418.m07051 chaperonin, putative similar to
           SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
           subunit, chloroplast precursor (60 kDa chaperonin beta
           subunit, CPN-60 beta) [Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 597

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 235 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSCHF 86
           S  S   PP  R SS     + S  F  T+++ Q++  FP + AA   HF
Sbjct: 10  SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57


>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to guanine nucleotide-binding protein beta 5
           (GI:1001939) [Mesocricetus auratus]
          Length = 425

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 210 GGVRILSADLENSGEDVRGDVAPVRTH 290
           GG+++ S + ++S   +R DV+P RTH
Sbjct: 12  GGLKVESGEQKSSWPTMRFDVSPYRTH 38


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 456 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 337
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 456 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 337
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 ERSGKSFLFCLSVRVPWNPIEG 173
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At5g16770.2 68418.m01964 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -3

Query: 499 Y*NTNSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 320
           Y NT+  K+  +  ID   HRP     +T H  VL A P          L       +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161

Query: 319 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 233
           A  L    LL   ++  +T+  T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192


>At5g16770.1 68418.m01963 myb family transcription factor (MYB9)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 336

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -3

Query: 499 Y*NTNSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 320
           Y NT+  K+  +  ID   HRP     +T H  VL A P          L       +L+
Sbjct: 107 YWNTHLRKKLLQMGIDPVTHRP-----RTDHLNVLAALPQLIAAANFNSLLNLNQNVQLD 161

Query: 319 ALHL--GDLLRIWVRTGATSPRTSSPEFSRS 233
           A  L    LL   ++  +T+  T++P FS S
Sbjct: 162 ATTLAKAQLLHTMIQVLSTNNNTTNPSFSSS 192


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 9    IPEPGSGTVSIIVPSSLKTSVRRGNPKWHEDAAER 113
            +P+ G  +   + P   +T +RRGN  W++DA+ R
Sbjct: 1361 VPQEGDSSGRELFP---ETDLRRGNSGWYDDASLR 1392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,135,522
Number of Sequences: 28952
Number of extensions: 378235
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)