Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1275
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   2.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   6.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.2  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 434 KACVMKHRISVCSSIILVVGFPPPCPALVSNLAS 333
           + C+   ++  C +  +  GF  P P  VSN  S
Sbjct: 135 RVCMWADQVPECKNEEVAGGFTCPAPGEVSNSGS 168


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 434 KACVMKHRISVCSSIILVVGFPPPCPALVSNLAS 333
           + C+   ++  C +  +  GF  P P  VSN  S
Sbjct: 135 RVCMWADQVPECKNEEVAGGFTCPAPGEVSNSGS 168


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 236 PTVSASPGIRADSRSAAECCV 174
           PT ++ P I AD  S A  C+
Sbjct: 81  PTANSYPAIVADILSGAIACI 101


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 437 PKACVMKHRISVCSSII 387
           P  CV+ HR+  C S +
Sbjct: 134 PNQCVICHRVLSCKSAL 150


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -3

Query: 546 LEVVNDTVFLVYFIILCAFVWIIILLW 466
           +  V  T+ ++   I C+  +I+  LW
Sbjct: 260 INTVKQTIAVIVMYIACSTPFILAQLW 286


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 294 AAVRPRTSASAAHPRSSWSADSISVAGYSG 205
           AA     S  + HP  SW  +++S A + G
Sbjct: 148 AATHHLGSVYSRHPYESWPFNTMSGATHHG 177


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,299
Number of Sequences: 336
Number of extensions: 2671
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)