Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1275
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.40 
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    28   1.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   2.8  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.0  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.6  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   6.6  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   8.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 372 SAAVPRLGVEPGEQRRALRRTSAPPRAAVRPRTSASA 262
           SAA P     P  Q      TSAPPR ++ P + ASA
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA 157


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 169 ALTQHSAAERESARIPGDADT--VGGPRRPRVRCTR*SSWPNCST 297
           A+ + S    +SA +P    T  +G PRR  VR T   + PN +T
Sbjct: 56  AVPRRSPTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHPNTTT 100


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 144 WVLLSELP*SDTQACPIVNFW 82
           W+ L+ LP   + AC +V+FW
Sbjct: 156 WIWLTVLPSEISAACEVVDFW 176


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 275 VRGRTAARGGALVRRSARRCSPGSTPRRGTAAENPPLKLLTNTLISYVS 421
           V G ++A   A    + ++ + GS P+R      PP K +    I+YV+
Sbjct: 38  VVGSSSANANASTAETGKKSAGGSKPKRRRGERIPPSKRIRKA-IAYVN 85


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 209 EYPATLILSADHDDRGCAALAEVRGRTAARGGALV 313
           EYP + +L   +DD G   + + RG    +G  L+
Sbjct: 76  EYPKSRLLRVCYDDNGTFKVKDKRGLVYVQGERLI 110


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 552 VDLEVVNDTVFLVYFIILCAFVWIIILL 469
           +D + +  T+ L +F+ LC F+ II+ L
Sbjct: 29  IDKKALLITILLTFFVSLCVFLSIILPL 56


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 423 HET*DISVFVNNFSGGFSAAVPRLGVEPGEQRRALRRTSAPPRAAVRPRTSASAAHP 253
           H T  +   +N F   F A + R    P E  RAL   +  P+    PR+S+   +P
Sbjct: 620 HPTLLVIDLINEFENLF-ADLERPSTPPVEIERALTPITTSPQKLKLPRSSSPCKNP 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,232
Number of Sequences: 5004
Number of extensions: 42830
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)