Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1275
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38) 44 1e-04
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7) 31 0.56
SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 31 0.98
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 31 0.98
SB_11354| Best HMM Match : Collagen (HMM E-Value=0.09) 30 1.3
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09) 30 1.3
SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7) 29 2.3
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 29 4.0
SB_7891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56555| Best HMM Match : 7tm_1 (HMM E-Value=4.4) 28 5.2
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 28 5.2
SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4) 28 6.9
SB_51764| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 27 9.1
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 27 9.1
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0) 27 9.1
>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
Length = 253
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +2
Query: 164 YSPLHNIQPPSENRPEYPATLILSADHDDR 253
YSPLHNI+ P +N +YP ++L+ADHDDR
Sbjct: 160 YSPLHNIKVP-DNGAQYPPLMLLTADHDDR 188
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 3 VAACINQRPDLYGAAVVQV 59
V AC NQ P+L+G + QV
Sbjct: 140 VCACANQAPELFGCIIAQV 158
>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
Length = 288
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 333 QRRALRRTSAPPRAA-VRPRTSASAAHPRSSWSADSISVAGYSGRFSLG 190
Q R +T PPR A + +A+A P +S S+ SIS+A R SLG
Sbjct: 71 QGRITNKTKTPPRRANLLEAFTATAGTPAASRSSSSISLASPGMRSSLG 119
>SB_44703| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 757
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 333 QRRALRRTSAPPRAAVRPRTSASAAHPR--SSWSADSISVAGYSGR 202
+ R R S PPR+ PR +A+ +HPR +SW D + + R
Sbjct: 387 EMRVTRPNSPPPRS---PRLTATQSHPRPSTSWDVDDAELCAVADR 429
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 342 PGEQRRALRRTSAPPRAAVRPRTSASAAHPRSSWSADSISVAGYSGRF 199
PG QRRA + AP R RP + + P +W + + S RF
Sbjct: 169 PGRQRRATHESRAPNRP--RPDLTLDESKPEGAWQSGTESTERRKSRF 214
>SB_11354| Best HMM Match : Collagen (HMM E-Value=0.09)
Length = 116
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 272 QRVQRTRGRRGPPTVSASPGIRAD 201
Q +Q +G RGPP S +PG R D
Sbjct: 40 QGLQGPKGERGPPGASGAPGARGD 63
>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
Length = 536
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 272 QRVQRTRGRRGPPTVSASPGIRAD 201
Q +Q +G RGPP S +PG R D
Sbjct: 188 QGLQGPKGERGPPGASGAPGARGD 211
>SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -3
Query: 378 GFSAAVPRL-GVEPGEQRRALRRTSAPPRAAVRP----RTSASAAHPRSSWSADSISVAG 214
G SA P L G+ GE +RA+RR+ ++ +RP R S S R+S + S +
Sbjct: 266 GNSACNPYLYGLLNGEFKRAVRRSLPSFKSRIRPFQVPRNSVSFVSRRASVLSPSPKHSD 325
Query: 213 YSGRFSLG 190
YSGR + G
Sbjct: 326 YSGRPTSG 333
>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
Length = 433
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 257 CAALAEVRGRT--AARGGALVRRSARRCSPGSTPRRGTAAENPP 382
CAAL +T +ARG A RR S P RG AE PP
Sbjct: 349 CAALQSTAWQTGSSARGCAPRISGGRRKGGSSAPPRGGTAERPP 392
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 519 LVYFIILCAFVWIIILLWQHLSFYKLQTQSLRHET 415
L Y ++L A +W+ LLW +K QT + E+
Sbjct: 322 LYYIVVLAACLWLAQLLWTGCFIWKEQTFIMARES 356
>SB_7891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 220 DADTVGGPRRPRV-RCTR*SSWPNCSTW 300
D V G R RV C R SWP+C +W
Sbjct: 8 DKTAVHGCRTARVIDCARVPSWPDCESW 35
>SB_56555| Best HMM Match : 7tm_1 (HMM E-Value=4.4)
Length = 220
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 306 APPRAAVRPRTSASAAHPRSSWSADSISVAGYSGRFSLGG*MLCKGEYFSK 154
+P AAV+P + S+ R S+S D GY G ++L L K +F++
Sbjct: 61 SPYPAAVKPAAAESSLKGRDSFSRDLCQAVGYLG-YTLFFTSLIKTRHFTR 110
>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 333 QRRALRRTSAPPRAAVRPRTSASAAHPR--SSWSADSISVAGYSGR 202
+ R R PPR+ PR +A+ +HPR +SW D + + R
Sbjct: 389 EMRVTRPNIPPPRS---PRLTATQSHPRPSTSWDVDDAELCAVADR 431
>SB_19720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 332 SGARCAGRAPRHVLQFGHELQRVQRTRGRRGPPTVS 225
+G C GR PR V +G E+ + + G GP V+
Sbjct: 195 TGGICFGRCPRGVGSYGSEVLALALSTGGSGPGAVN 230
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 339 GEQRRALRRTSAPPRAAVRPRTSASAAHPRSS 244
G R R+T PPR ++R TS AAH SS
Sbjct: 691 GGSTRDGRQTQHPPRKSLRIMTSPQAAHRLSS 722
>SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)
Length = 488
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 330 RRALRRTSAPPRAAVRPRTSASAA 259
RRA R+TS P + A RPR + A+
Sbjct: 103 RRASRKTSKPKKQAARPREARKAS 126
>SB_51764| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 812
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 342 PGEQRRALRRTSAPPRAAVRPRTSASAAHPRSSW 241
PG QRRA + AP R RP + + P +W
Sbjct: 779 PGRQRRATHESRAPNRP--RPDLTLDESKPEGAW 810
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 242 HDDRGCAALAEVRGRTAARGGALVRRSARRCSPGSTP 352
++ CAA G A R G R++ RC PGS+P
Sbjct: 665 YNHTACAAKCGDEGTEAKRQG---RKNKERCQPGSSP 698
>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 1034
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 372 SAAVPRLGVEP--GEQRRALRRTSAPPRAAVRPRTSASAAHPRSSWSAD 232
S +P+ G++ + + R APP VRP S + + PR S+D
Sbjct: 595 SKGIPKKGIQSVSDDTTTIIPRRKAPPPPKVRPAGSRTQSLPRGLQSSD 643
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,852,957
Number of Sequences: 59808
Number of extensions: 363171
Number of successful extensions: 1141
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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