Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1275
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    31   0.86 
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans Phosphodieste...    29   2.6  
AC024877-3|AAF60898.1|  760|Caenorhabditis elegans Phosphodieste...    29   2.6  
Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.     28   6.1  
Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 317 RSARRCSPGSTPRRGTAAEN-PP---LKLLTNTLISYVS*RKLWV*SL*NDKCCHSKIII 484
           R   RC+P   PRR  A  N PP   + + TN +IS    RK  V SL + +  H   I+
Sbjct: 7   RRFSRCAPSPRPRRNYALANIPPPAAVHIRTNDMISPEERRKSRVKSLKHAQLLHGYYIL 66

Query: 485 HTN 493
             N
Sbjct: 67  SNN 69


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -1

Query: 371 PPPCPALVSNLASSGARCAGRAPRHVLQFGHELQRVQRTRGRRGPPTVSASPGIRADSRS 192
           PPP PA ++N A+S  R A   P H      +L        +R       +P  R D+R 
Sbjct: 253 PPPAPAHLANKANSRGRPANPIPPHRRPVPKDLVPPGFPSLKRASSQRDPTPIKRKDTRE 312

Query: 191 AAE 183
            AE
Sbjct: 313 VAE 315


>AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoformb protein.
          Length = 697

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 101 HAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 226
           HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 606 HAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>AC024877-3|AAF60898.1|  760|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoforma protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 101 HAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 226
           HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 606 HAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>Z75545-1|CAB61025.1|  665|Caenorhabditis elegans Hypothetical
           protein K10D3.2 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -3

Query: 363 VPRLGVEPGEQRRALRRTSAPPRAAVRPRTSASAAHPRSSWSADS---ISVAGYSGRFSL 193
           VP+    P     A  R S  P +  R   S++ + PRS+ S  +   I VA   G F+L
Sbjct: 560 VPKSSSFPARLSTAPSRRSRIPLSTSRISISSTTSTPRSARSPSTTSRIRVASIMGDFTL 619

Query: 192 GG*MLCKGEYFSKYS 148
               L  GE  S  S
Sbjct: 620 ANFSLSDGEKVSVLS 634


>AB000913-1|BAA21715.1|  665|Caenorhabditis elegans UNC-14 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -3

Query: 363 VPRLGVEPGEQRRALRRTSAPPRAAVRPRTSASAAHPRSSWSADS---ISVAGYSGRFSL 193
           VP+    P     A  R S  P +  R   S++ + PRS+ S  +   I VA   G F+L
Sbjct: 560 VPKSSSFPARLSTAPSRRSRIPLSTSRISISSTTSTPRSARSPSTTSRIRVASIMGDFTL 619

Query: 192 GG*MLCKGEYFSKYS 148
               L  GE  S  S
Sbjct: 620 ANFSLSDGEKVSVLS 634


>Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical
           protein Y69H2.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 564 HNVSVDLEVVNDTVFLVYFIILCAFVW 484
           H+  +  E + DTV LV  I LCAF+W
Sbjct: 44  HSTRLLSEWLVDTVSLVASIALCAFLW 70


>Z81543-3|CAB04425.1|  322|Caenorhabditis elegans Hypothetical
           protein F49B2.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 372 SAAVPRLGVEPGEQRRALRRTSAPPRAAVRPRTSASAAHPRSSWSADSI 226
           +AA P +G +P    R    +  PPRA      S     PR S + DS+
Sbjct: 192 TAAAP-VGGQPSTPSREFNGSHGPPRAPGLGPASCQKVRPRQSNTRDSV 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,501
Number of Sequences: 27780
Number of extensions: 259539
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)