Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1273
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           29   1.7  
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    28   5.1  
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735...    27   6.8  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   6.8  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   8.9  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 502 RKSPVSLFSLLPSRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 338
           R +P SL S        G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 91  RAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 363 GNGESGFDS---GEGA*ETATTSKEGSRRANYPLPAREGSNENND 488
           GN +S  D+   G+ + E  TT+KEG        PA+EG + + +
Sbjct: 228 GNEDSSDDADYEGKSSDEEETTAKEGESTDEKETPAKEGESSDEE 272


>07_01_0886 -
           7356591-7356662,7357002-7357079,7357373-7357444,
           7357511-7357600,7357669-7357783,7358509-7358639,
           7358717-7358992,7360147-7360283,7360368-7360502,
           7360958-7361325,7362111-7362229,7362295-7362339
          Length = 545

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 414 TTSKEGSRRANYPLPAREGSNENNDTGLLR 503
           TT+   SRR++ PLP  + S+  ++T  +R
Sbjct: 49  TTTASSSRRSSVPLPLPDPSSSRSETSAVR 78


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 430 PSLDVVAVSQAPSPESNPDSPLP 362
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 152 NTCNQNSDQ*WDECFY*IKTNRRR 223
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,709
Number of Sequences: 37544
Number of extensions: 311562
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)