BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVm1273 (517 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g38560.1 68417.m05459 expressed protein 29 1.4 At2g07020.1 68415.m00803 protein kinase family protein contains ... 29 1.4 At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 29 2.5 At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 29 2.5 At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 2.5 At3g05660.1 68416.m00630 disease resistance family protein conta... 28 4.3 At5g01990.1 68418.m00118 auxin efflux carrier family protein con... 27 5.7 At2g41000.1 68415.m05064 DNAJ heat shock N-terminal domain-conta... 27 7.5 At1g14270.1 68414.m01692 CAAX amino terminal protease family pro... 27 7.5 >At4g38560.1 68417.m05459 expressed protein Length = 521 Score = 29.5 bits (63), Expect = 1.4 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +3 Query: 3 VSSYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 152 V SY + + + + + GD A+GS Q +SYS+ + V+LEL Sbjct: 339 VGSYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388 >At2g07020.1 68415.m00803 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 700 Score = 29.5 bits (63), Expect = 1.4 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 269 QKLSRSSKLT-TSDARPSVDWF*SNKSTHPITGQSSD 162 Q L S L+ S RPS+DWF N+S + + SS+ Sbjct: 218 QALVSDSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254 >At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to SP|P18708 Vesicular-fusion protein NSF (N-ethylmaleimide-sensitive fusion protein) (NEM-sensitive fusion protein) {Cricetulus griseus}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; contains non-consensus AT-AC splice sites at intron 2 Length = 742 Score = 28.7 bits (61), Expect = 2.5 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%) Frame = +1 Query: 202 DQNQSTEGLASE--VVNFDDLDNFCRSHG 282 +Q+Q T G ASE V+ FD++D C+S G Sbjct: 307 EQDQRTLGDASELHVIIFDEIDAICKSRG 335 >At3g17920.1 68416.m02282 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam:PF00560 Length = 962 Score = 28.7 bits (61), Expect = 2.5 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 439 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 338 RLLPSL VV+ +P+ + P S LP + + V E Sbjct: 84 RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117 >At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical to gi_3883128_gb_AAC77827 Length = 133 Score = 28.7 bits (61), Expect = 2.5 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 430 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323 PS A + APSP +NP P T V++ ES Sbjct: 39 PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74 >At3g05660.1 68416.m00630 disease resistance family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780 Length = 883 Score = 27.9 bits (59), Expect = 4.3 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 190 VLLLDQNQSTEGLASEVVNFDDLDNFCRSHGQVPATHLSNV 312 +L LD N+ + L EV+N L SH Q T N+ Sbjct: 211 ILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNI 251 >At5g01990.1 68418.m00118 auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam:PF03547 Length = 431 Score = 27.5 bits (58), Expect = 5.7 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -2 Query: 513 ITGLVRVPYRYFRYYLPVPGVGNL 442 + +VR PY YF++ + GVGN+ Sbjct: 114 VASIVRPPYPYFKFTIIQIGVGNI 137 >At2g41000.1 68415.m05064 DNAJ heat shock N-terminal domain-containing protein similar to SP|O75190 DnaJ homolog subfamily B member 6 (Heat shock protein J2) Homo sapiens; contains Pfam profile PF00226 DnaJ domain Length = 275 Score = 27.1 bits (57), Expect = 7.5 Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 11/114 (9%) Frame = +1 Query: 205 QNQSTEGLASEVVNFDDLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSR------- 363 Q Q L S + D L NFC G A N + FR+ F RL + Sbjct: 41 QGQEGTKLCSSGTSRDCL-NFCLIRGYAEAVADLNFRCLRFRFRFDRLKFFPMVDHYQVL 99 Query: 364 -VTGNQGSIPEREPEKRLP---HPRKAAGAQITHSRHGKVVTKITIRDSYEACN 513 VT N ++ +RL HP K A + H RH V + ++YE N Sbjct: 100 GVTRNATKKEVKDAFRRLAIKYHPDKHAQSP-EHVRHNATVRFKLVSEAYEVLN 152 >At1g14270.1 68414.m01692 CAAX amino terminal protease family protein contains Pfam profile PF02517: CAAX amino terminal protease family Length = 353 Score = 27.1 bits (57), Expect = 7.5 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 7 VVICLSQRLSHACLSASRIKAIPRMAQY 90 ++ CLSQ S CLS SR +P+ Y Sbjct: 18 IISCLSQSSSLLCLSDSRRLILPKTCTY 45 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,545,852 Number of Sequences: 28952 Number of extensions: 237771 Number of successful extensions: 611 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 590 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 611 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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