Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1272
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.2  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    21   8.2  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   8.2  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   8.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 126 LDGMSISCVTCKVIR*RARAHNVLNALGSSCKAW-H*NQFGTL 1
           L G  ++ VTC++ +    + +  N  G+S  AW + N  G+L
Sbjct: 392 LSGSVVTKVTCELFQATLSSSSDTNRFGTSGLAWLYLNNEGSL 434


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = +1

Query: 430 RKTAISPQLYPSW---TRY 477
           +KT   P L+P+W   TRY
Sbjct: 181 KKTESQPMLWPAWVYCTRY 199


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 414 LIERVKKDGYFAPIISQ 464
           L+E VKK GY  P   Q
Sbjct: 169 LLENVKKSGYTKPTAIQ 185


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 664 YLI*FNVKFDLMYVKILLINDVVE*NNQFNKFIIY 768
           Y++  +   DL+++ I L N + +  N   +   Y
Sbjct: 289 YIVLMSFASDLLFILIQLFNSLRQMKNNLERIYFY 323


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 664 YLI*FNVKFDLMYVKILLINDVVE*NNQFNKFIIY 768
           Y++  +   DL+++ I L N + +  N   +   Y
Sbjct: 289 YIVLMSFASDLLFILIQLFNSLRQMKNNLERIYFY 323


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 664 YLI*FNVKFDLMYVKILLINDVVE*NNQFNKFIIY 768
           Y++  +   DL+++ I L N + +  N   +   Y
Sbjct: 289 YIVLMSFASDLLFILIQLFNSLRQMKNNLERIYFY 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,869
Number of Sequences: 336
Number of extensions: 3437
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)