Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1272
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...   136   4e-33

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score =  136 bits (328), Expect = 4e-33
 Identities = 91/179 (50%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
 Frame = +3

Query: 9   QIGSSAMPYKRNPMRSER-CAL*PVI*LLYT*RS*YSCRPMVRTNPRRLCQSSHYPRRGF 185
           QIGSSAM YKRNPMR ER C+    I  L       +    V+   R L  SS+  R   
Sbjct: 283 QIGSSAMAYKRNPMRCERICSQARYIMNLIPNALNTAS---VQWFERTLDDSSNR-RSLL 338

Query: 186 PY*RYSTDTI-KYLPR--PGGVSESDA--RHIAQELPFMATENIIMAMVQAGGDRQVCHE 350
           P     TD++ K L     G V       +HI  ELPFMATENIIMAM + G  R  CHE
Sbjct: 339 PEAFLFTDSVLKILLNVISGMVIYPKVIQKHIRAELPFMATENIIMAMTKHGASRHECHE 398

Query: 351 KIRVLSHEAGAQVKQHGRDNDLIERVKKDGYFAPIISQLDKILDASTFIGRAPNKWTSF 527
           +IRVLSH+AG  VK+ G DNDLIER+K   YFAPI  +LD +LDASTF+GRAP +  SF
Sbjct: 399 QIRVLSHQAGRVVKEEGGDNDLIERIKNTPYFAPIYDELDSLLDASTFVGRAPEQTESF 457



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 100 NAANTHAVQWLERTLDDSANRR-IXXXXXXXXXXXXXXXXNICQGLVVYPKVMR 258
           NA NT +VQW ERTLDDS+NRR +                N+  G+V+YPKV++
Sbjct: 314 NALNTASVQWFERTLDDSSNRRSLLPEAFLFTDSVLKILLNVISGMVIYPKVIQ 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,499
Number of Sequences: 5004
Number of extensions: 55540
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)