Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1272
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0149 - 1340621-1341154                                           30   2.3  
09_04_0395 + 17266560-17266593,17266656-17267199,17267297-172677...    29   5.4  
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349...    28   9.4  
01_06_0928 + 33085403-33089224                                         28   9.4  

>01_01_0149 - 1340621-1341154
          Length = 177

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 201 STDTIKYLPRPGGVSESDARHIAQELPFMATENIIMAMVQAGGDRQVCHEKIR 359
           +TD+   LP  G   E+D    A+  P+   +NI M++++    R  C+++++
Sbjct: 22  TTDSNIRLPSNGAAGETDGNKQAKSRPWECCDNIEMSVLKIYPPRWRCNDEVK 74


>09_04_0395 +
           17266560-17266593,17266656-17267199,17267297-17267766,
           17267855-17267990,17268097-17268168,17268228-17268276,
           17268292-17268360,17268609-17268680,17268769-17268786
          Length = 487

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 629 CSGQINIKCLVPLAC 585
           CSG++NI CL+ LAC
Sbjct: 424 CSGKVNIDCLIWLAC 438


>10_07_0106 -
           12933918-12934041,12934164-12934486,12934584-12934937,
           12935029-12935646
          Length = 472

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
 Frame = +3

Query: 174 RRGFPY*RYSTDTIKYLPRPGGVSESDARHIAQELPFMATENIIMAMVQAGGDRQV---C 344
           RR F Y RY   T+K L       E     +       A    ++A+V  GG   V   C
Sbjct: 129 RRSFEYGRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVVTADC 188

Query: 345 HEKIRVLSHE 374
           + + R   H+
Sbjct: 189 YSEARAFIHD 198


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 508 GALPMNVEASN---ILSNWDIIGAK*PSFLTRSIKSLSLPCC 392
           G+LP N E       L+ WD+   K  SFL   + SLS+  C
Sbjct: 783 GSLPSNTELFGRCMALTLWDVPNVKTLSFLPEGLTSLSIDRC 824


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,491
Number of Sequences: 37544
Number of extensions: 358764
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)