Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1272
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59491| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_27028| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)                29   4.1  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   7.2  

>SB_59491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 103 AANTHAVQWLERTLDDSANRR-IXXXXXXXXXXXXXXXXNICQGLVVYPK 249
           A  T +VQWLERTLDDSANRR I                N+ +GLVVYPK
Sbjct: 31  AQQTASVQWLERTLDDSANRRIILAEGFLTADIVLSTLQNVFEGLVVYPK 80



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 18 SSAMPYKRNPMRSERC 65
          SSAMPYKRNPMRSERC
Sbjct: 2  SSAMPYKRNPMRSERC 17


>SB_27028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 103 AANTHAVQWLERTLDDSANRR-IXXXXXXXXXXXXXXXXNICQGLVVYPK 249
           A  T +VQWLERTLDDSANRR I                N+ +GLVVYPK
Sbjct: 20  AQQTASVQWLERTLDDSANRRIILAEGFLTADIVLSTLQNVFEGLVVYPK 69


>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
          Length = 360

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 565 CVFSDNGIDFFIQKLVHLFGALPMNVEASNILSNW 461
           C+ S NG+ F I++ +++   +P N+EA+    NW
Sbjct: 20  CISSSNGLSFEIEREMNMPDVIPNNIEATPD-GNW 53


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 288  ATENIIMAMVQAGGDRQVCHEKIRVLSHEAGAQVKQHGRDNDLIER 425
            A EN++M + +  G+RQ    ++R    +A   ++++  DND +ER
Sbjct: 1735 AQENLMMRLEEELGERQRLENELR----KANENLEEYAADNDRLER 1776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,483,525
Number of Sequences: 59808
Number of extensions: 422098
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)