Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1272
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    44   2e-04
Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF068720-6|AAC17784.1|  541|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF078790-13|AAC26938.1|  123|Caenorhabditis elegans Hypothetical...    28   8.4  

>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
 Frame = +3

Query: 9   QIGSSAMPYKRNPMRSERCAL*PVI*LLYT*RS*YSCRPMVRTNPRRLCQSSHYPRRGFP 188
           QIGSSAMPYK+NPM+SERC     +          +   +      R    S   R   P
Sbjct: 282 QIGSSAMPYKKNPMKSERCC---ALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIP 338

Query: 189 Y*RYSTD----TIKYLPRPGGVSESDARHIAQ-ELPFMATENIIMAMVQAGGDRQVCHEK 353
               + +    T++ +     V   + + I + E+ F+  E  +M + + G DRQ  H  
Sbjct: 339 DVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAV 398

Query: 354 IRVLSHEAGAQVKQHGRDNDLIERVKKDGYFAPIISQLDKIL-DASTFIGRAPNKWTSFW 530
           IR  + EA         D   I +   D +F  +  ++  ++ +   F GR  ++  SF 
Sbjct: 399 IRKTALEAKQLQATQKVD---IRQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFI 455

Query: 531 MKKSIP 548
            K+  P
Sbjct: 456 AKELKP 461


>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 9   QIGSSAMPYKRNPMRSERC 65
           QIGSSAMPYK+NPM+SERC
Sbjct: 282 QIGSSAMPYKKNPMKSERC 300


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 404 SAVLLHLSPCFMGEHPNLFVAHLTVTSRL-DHSHYYI 297
           ++V++ +SP F+ E   LFVAH  V  +   H H Y+
Sbjct: 179 ASVIICISPQFVAEQWQLFVAHAHVARKFGGHLHMYV 215


>AF068720-6|AAC17784.1|  541|Caenorhabditis elegans Hypothetical
           protein K02H11.4 protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 398 VLLHLSPCFMGEHPNLFVAHLTVTSRL-DHSHYYIFRRHER*FLSDMTRITFGYTTRP-W 225
           V++ +SP F+ E   +FVAH  ++     H H Y+    E  F   +     GY T   W
Sbjct: 203 VIICISPQFVAEQWQIFVAHAHISHNFGGHLHLYVTSMLESYFDLVLEYEKLGYVTLDFW 262

Query: 224 QIFN 213
             +N
Sbjct: 263 MRYN 266


>AF078790-13|AAC26938.1|  123|Caenorhabditis elegans Hypothetical
           protein F36H12.16 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 431 LNAFNQIIISAVLLHLSPCFMGEHPNLFVAHLTVTS-RLD 315
           ++AF  ++  A+ +HLSPC   +  ++F ++L   S R+D
Sbjct: 59  IHAFLDVVTGAIDIHLSPC-KSQETDIFYSNLAAGSHRID 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,260
Number of Sequences: 27780
Number of extensions: 313146
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)