Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1272
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    29   4.5  
At4g22880.1 68417.m03304 leucoanthocyanidin dioxygenase, putativ...    28   7.9  
At2g04530.1 68415.m00459 RNase Z 97% identical to RNase Z (GI:20...    28   7.9  

>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
 Frame = +3

Query: 345 HEKIRVLSHEAGAQVKQHGRDNDLIERVKKDGYFAPI------ISQLDKILDASTFIGRA 506
           H K+R++S+  G+++K+    N       K+G   PI      +   + +L   +F G  
Sbjct: 93  HHKMRLMSYPEGSKIKKQTHINKTFGHFWKNGVGRPIGTVPILLVSKEALLKMKSFDGDN 152

Query: 507 PNKWTSFWMKKSIPLSLN 560
            N  +S W K   P S N
Sbjct: 153 SNPQSS-WSKTYKPTSSN 169


>At4g22880.1 68417.m03304 leucoanthocyanidin dioxygenase, putative /
           anthocyanidin synthase, putative similar to SP|P51091
           [Malus domestica]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily
          Length = 356

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 333 RQVCHEKIRVLSHEAGAQ-VKQHGRDNDLIERVKKDG--YFAPIISQLDK 473
           R+ C E+++  S + G   +  HG   DL+ERVKK G  +F+  + + +K
Sbjct: 63  RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEK 112


>At2g04530.1 68415.m00459 RNase Z 97% identical to RNase Z
           (GI:20975607) [Arabidopsis thaliana]; similar to RNase Z
           (GI:20975609) [Arabidopsis thaliana]; identical to cDNA
           RNase Z (At2g04530) GI:20975606
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 345 HEKIRVLSHEAGAQVKQHGRDNDLIERVKKDGYFAPIISQLDK 473
           H K  V++H+  AQ++ + R    +  VK  GYF+ I   +++
Sbjct: 20  HHKPPVITHQLAAQIQSNRR--HFVSPVKVSGYFSSISRAIEE 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,711
Number of Sequences: 28952
Number of extensions: 289324
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)