Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1271
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.052
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.37
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.37
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.48
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.85
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.1
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.0
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.6
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 4.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.5
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.7 bits (71), Expect = 0.052
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -3
Query: 485 STKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KF-PTSKSTKWSHSLTIS 309
S+ T S+SS + ++SS+ +S+ T + +S PTS S+ S S + S
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314
Query: 308 TSMPSTLSTSVKKNSRALSRLQGPSTTS 225
+S STLS+S +S + S P+++S
Sbjct: 315 SSFSSTLSSSSMSSSSSFS--SSPTSSS 340
Score = 30.7 bits (66), Expect = 0.21
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = -3
Query: 491 LTSTKLRPGTQPSTSSIKELFNTS-SNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT 315
LTS+ L + PSTSS ++S S+ +S+ + +S++ +S S+ S S T
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSST 289
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPSTT 228
IS+S S+ S+S S +S S++
Sbjct: 290 ISSS--SSSSSSPTSTSSTISSSSSSSSS 316
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -3
Query: 464 TQPSTSSIKELFNTSSNLNSTR--YHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPST 291
+QPS SS +S+ ST Y + + +S P+S S+ S ++STS +
Sbjct: 185 SQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSS--SSPSSSSSSTLTSSSLSTSSIPS 242
Query: 290 LSTSVKKNSRALSRLQGPSTTS 225
S+S S +LS ST S
Sbjct: 243 TSSSSSSTSSSLSSSSSSSTAS 264
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -3
Query: 491 LTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTI 312
++S+ + STSS ++SS+ S+ + +S PTS S+ S S +
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSS 349
Query: 311 STSMPSTLSTSVKKNSRALSRLQGPSTTS 225
+S + +TS K+S + S S+++
Sbjct: 350 PSSSSFSSTTSSSKSSSSFSSTVSSSSST 378
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.1 bits (67), Expect = 0.16
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = -3
Query: 455 STSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSV 276
S+SSI F++ S++ S+ + S+ +S ST + S + STS PS++S+S+
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSI-----SSSSTSSTFS-SASTSSPSSISSSI 618
Query: 275 KKNSRALSRLQGPSTTS 225
+S LS PST+S
Sbjct: 619 SSSSTILSS-PTPSTSS 634
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -3
Query: 455 STSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSV 276
STSS E +NTS + + T TSL + ++ S +L ++S+ ST T+
Sbjct: 805 STSSTNE-YNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTD 863
Query: 275 KKNSRALSRLQGPSTT 228
S QGPS++
Sbjct: 864 SVTSTTALTSQGPSSS 879
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -3
Query: 491 LTSTKLRPGTQPSTSSIKELF-NTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT 315
+ ST STS I + +T + STR T S K PT+ S S+
Sbjct: 412 IVSTSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVP 471
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPSTTS 225
S+S+ ST + +S A S ST+S
Sbjct: 472 SSSSVQPQSSTPISSSSSASSPQSTLSTSS 501
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.37
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = -3
Query: 485 STKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIST 306
S P T PST+SI E T STR +H + + P SK T H T
Sbjct: 129 SHSYEPTTFPSTTSITENLPTIDPTRSTRSSSHIQSLS------PESKQTSDGHRPPSPT 182
Query: 305 SMPSTLSTSV 276
S+ +T STS+
Sbjct: 183 SI-TTTSTSI 191
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.37
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = -3
Query: 488 TSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIS 309
T+T P + S+SS ++SS+ +S+ + +S +S S+ S S + S
Sbjct: 149 TTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SSSSSSSSSSSSSSSSS 205
Query: 308 TSMPSTLSTSVKKNSRALSRLQGPSTT 228
+S+P T STS +S + S S++
Sbjct: 206 SSVPITSSTSSSHSSSSSSSSSSSSSS 232
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.5 bits (63), Expect = 0.48
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = -3
Query: 470 PGTQPSTSSIKE--LFNTSS----NLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIS 309
P + PS +S+ E L SS + S R + F S K P+S S S++ +
Sbjct: 571 PSSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSK 630
Query: 308 TSMPSTLSTSVKKNSRALSRLQGPSTT 228
S PS+ S S K + LS + P +T
Sbjct: 631 QSFPSSPSISKKLETSRLSTKKLPGST 657
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.85
Identities = 22/88 (25%), Positives = 43/88 (48%)
Frame = -3
Query: 530 PKPFNQYNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFP 351
P P + + F + ++ + + +T++ +NTSS L S+ + +S++ P
Sbjct: 190 PPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVL---P 246
Query: 350 TSKSTKWSHSLTISTSMPSTLSTSVKKN 267
TS T S +T+S+S S+ + S N
Sbjct: 247 TSIITSTSTPVTVSSSSLSSFTPSYSTN 274
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = -3
Query: 467 GTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTL 288
G P T++I N +SN + +T K +S S+ S+S TISTS + +
Sbjct: 50 GPVPGTTTIYPTSNVASNTSENYPYTGSKSLSS---------SSILSNS-TISTSSSTPI 99
Query: 287 STSVKKNSRALSRLQGPSTTS*P 219
+ SV +S LS P+T+ P
Sbjct: 100 TASVPTSSSILSNSTIPTTSPVP 122
Score = 26.2 bits (55), Expect = 4.5
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Frame = -3
Query: 581 FYQRSYEVNARRVLGAAPKPFNQYNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSNLNST 402
F S + +L A P+ Y V T+T S +S + S +L+S+
Sbjct: 24 FDYASLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSS 83
Query: 401 RYHTHKKLFTS----LV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALSRLQGPS 234
++ + TS + PTS S + ++ ++ +P+T ST +S LS PS
Sbjct: 84 SILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPT--SSSILSNSTIPS 141
Query: 233 TTS 225
++S
Sbjct: 142 SSS 144
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.0
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = -3
Query: 491 LTSTKLRPGTQPSTSSIKEL-FNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT 315
L+S K Q + +S K + TSS+ + THK P S S + SL
Sbjct: 19 LSSGKNGAAAQQAANSPKTVSLMTSSSKAANALQTHKSSLARAASAVPFSPSKATTVSLK 78
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPS 234
S S+ S + N ++S PS
Sbjct: 79 ESASLTSLSNNKSVSNLNSISGASSPS 105
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = -3
Query: 467 GTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMP--- 297
G+Q STS + +T+S L+S+ +H+ + PT S +S++ + S+P
Sbjct: 144 GSQASTSLLHPRRSTTSLLSSSAHHSRSSYYDLAT---PTRSS--FSYNTVGAASLPSGG 198
Query: 296 -STLSTSVKKNSRA 258
S LS+S++ +S++
Sbjct: 199 LSNLSSSLRSSSKS 212
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 163 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 38
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = -3
Query: 491 LTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFT-SLV*KFPTSKSTKWSHSLT 315
+TS+ P + S+SS ++S + +S++ + + S +SKS+ S S +
Sbjct: 147 ITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSS 206
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPSTTS 225
S++ PS+ +S K +S + P+++S
Sbjct: 207 KSSASPSSSKSSSKFSSSSFITSTTPASSS 236
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 220 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 98
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = -1
Query: 247 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 143
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,947
Number of Sequences: 5004
Number of extensions: 49091
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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