Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1271
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    33   0.16 
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    29   3.5  
03_02_0243 - 6744164-6744415,6744518-6745135                           29   4.7  
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241...    29   4.7  
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213...    28   6.2  
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    28   8.2  
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   8.2  

>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 319  KECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKFD-DVLN--NSFIELVEGWVPGRSLVEV 489
            K+ DH ++ +  + Q  E+ S L    L  F  D D++N   SF++  + W+   S+VE+
Sbjct: 1964 KQIDHLMELNSTSSQLREIFSELLHHLLNTFSKDVDIINYMESFVKSSDKWMDSTSMVEI 2023

Query: 490  KSTRN 504
              T N
Sbjct: 2024 PITSN 2028


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 280 EVDSVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 417
           E+  ++  EV ++K C  F  F +   Q   +  +LC+ ++VL  +
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454


>03_02_0243 - 6744164-6744415,6744518-6745135
          Length = 289

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 161 DDGVSGNIRFNIDCHSERLVV 223
           D  VSG+ RF++ C  ERLVV
Sbjct: 87  DVRVSGSARFDVQCRGERLVV 107


>01_06_0767 +
           31823659-31823734,31823859-31823979,31824078-31824189,
           31824278-31824691,31824795-31824898,31825017-31825136,
           31825344-31825467,31826567-31826680,31826789-31826980,
           31827328-31827424,31827505-31827653,31828729-31829013
          Length = 635

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -3

Query: 383 KLFTSLV*KFPTSKSTKWS-HSLTISTSMPSTLSTSVKKNSRALSRLQGPSTTS*PQAVH 207
           KLF S +  F  S++TKWS  SL++S S    +       S  L  ++GP++T  P  + 
Sbjct: 425 KLFESGLHDFLGSQNTKWSITSLSVSASKIFDIPIG---TSSILRYIKGPNSTVSPANLD 481

Query: 206 CDN 198
           C +
Sbjct: 482 CSS 484


>09_03_0177 -
           13120816-13120941,13121032-13121137,13121231-13121305,
           13121385-13121461,13122462-13122549,13122638-13122699,
           13122807-13122863,13122960-13123049,13123186-13123251,
           13123530-13123619,13123711-13123804,13123915-13124213
          Length = 409

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 459 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 355
           A+    K    ++ EF+ ++ P+  EA+H V L+I
Sbjct: 91  AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125


>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/71 (19%), Positives = 29/71 (40%)
 Frame = -1

Query: 265 QELSHGYKVRQPRLNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFY 86
           ++L   Y+  + +  H P  +   + +      V +M +GP   E    +  +D W   +
Sbjct: 487 KKLDSAYREAKEKEEHCPIFLLFSVNASAQFCGVAEM-IGPVDFEKSVDYWQQDKWTGQF 545

Query: 85  ELDWFVQKVNP 53
            + W + K  P
Sbjct: 546 PVKWHIVKDVP 556


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 396 PYTQEALHFVGLKISDVKVDKMVTFF 319
           PYTQ AL FV L +   K+D+  T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,541
Number of Sequences: 37544
Number of extensions: 289667
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)