Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1271
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092) 32 0.39
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 32 0.51
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 30 2.1
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 29 3.6
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_23735| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_29202| Best HMM Match : SH3_1 (HMM E-Value=3.9e-12) 29 4.8
>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
Length = 729
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 641 NFVGNYWQTNADLFEEDFLQFYQRSYEVNA-RRVLGAAPKPFNQYNLFLVLLTST 480
N G WQ+ ADL + F R ++N +++L A K +Y+L +L ST
Sbjct: 249 NGTGGIWQSVADLLPRSWFHFENRVVQLNIDKKILTVASKDGAKYSLSYDVLIST 303
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 172 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKE 2
N V ++ PK ++ P S+ D WM+ +E FV+K+N Q+ + SS F K+
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKD 300
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = -3
Query: 485 STKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIST 306
STK +P T +T+ T++NL STR T + T+ + P++K + T T
Sbjct: 174 STK-QPSTALTTTKQPTTQQTTTNLPSTRQPTTNQQTTTTL---PSTKQPTTTQQTT--T 227
Query: 305 SMPSTLS-TSVKKNSRALSRLQGPSTT 228
++PST T+ ++ + L + P+TT
Sbjct: 228 TIPSTKQPTTTQQTTTTLPSTKQPTTT 254
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = -3
Query: 569 SYEVNARRVLGAAPKPFNQYNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHT 390
S + + R + +AP +F T + ++ S + + S +S+ YH
Sbjct: 789 STQASVSRSIHSAPPSVQSSAIFSTQATVSTSEEQSRVYLESTPTISESLSRFSSS-YHI 847
Query: 389 HKKLFTSLV*KFPTSKSTKWSHSLTISTS-MPSTLSTSVKKNSRAL 255
FTS + + ++++TK S S TIS+S PS L +S + S A+
Sbjct: 848 GASDFTSTMIRSQSARATK-SESYTISSSHEPSLLMSSQAEVSTAM 892
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 229 VVDGPCNRERALEFFFTEVDSVEGIEVEMVKECDHFVD 342
++DG ++ RA +FF D V E + C HFVD
Sbjct: 666 ILDGLMDKIRAAKFFSIMADEVTSHNKEQLALCIHFVD 703
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 387 QEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSL 253
QE F+ +K+SD ++ FDFD+ + V +KE K SL
Sbjct: 640 QENEEFLDIKVSDESLETPQFQVTRFDFDSNSEVEKNKESSKRSL 684
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 485 STKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIST 306
+TK R Q ST+ + ++S +T+ T T T+ TK IST
Sbjct: 559 TTKTRTDVQTSTAVVSLTTTSTSTYATTKIATSTATLTETSTGVTTNTYTKTDTLTAIST 618
Query: 305 SMPSTLSTSV 276
S+ + ++TS+
Sbjct: 619 SITTLVTTSI 628
>SB_23735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -3
Query: 374 TSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALSRLQGPSTT 228
+++V FP K W++S + P + ++++NS+ S P+ +
Sbjct: 46 SNVVTSFPNQKENGWTNSGVVDMPPPRNTAQTIRRNSKKDSTQSSPNNS 94
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 353 PTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALSRLQGPSTTS*PQ 216
PTS + H +T ++ T STS ++ + + PSTT+ P+
Sbjct: 38 PTSSTPTTQHQVTTTSVSSPTSSTSTTQHQVTTTSVSTPSTTTPPR 83
>SB_29202| Best HMM Match : SH3_1 (HMM E-Value=3.9e-12)
Length = 364
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -3
Query: 374 TSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALSRLQGPSTT 228
+++V FP K W++S + P + ++++NS+ S P+ +
Sbjct: 285 SNVVTSFPNQKENGWTNSGVVDMPPPRNTAQTIRRNSKKDSTQSSPNNS 333
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,674,564
Number of Sequences: 59808
Number of extensions: 339043
Number of successful extensions: 1069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -