Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1271
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 36 0.028
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 36 0.028
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 36 0.037
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81125-6|CAI79225.1| 234|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown prote... 29 4.2
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.6
U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl transfe... 28 5.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.6
AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans alpha1,3-fuco... 28 5.6
AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical... 28 5.6
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 28 5.6
Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane... 28 7.4
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Frame = -3
Query: 488 TSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWS---HSL 318
T+T + P T P+T++I +S + ST + T++V PT+ +T S S
Sbjct: 239 TTTTMIP-TTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTSTAST 297
Query: 317 TISTSMPSTLSTSVKKNSRALSRLQGPSTTS*PQ 216
T +T ST +T+V ++ A S P+T+ P+
Sbjct: 298 TTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPE 331
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Frame = -3
Query: 488 TSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWS---HSL 318
T+T + P T P+T++I +S + ST + T++V PT+ +T S S
Sbjct: 221 TTTTMIP-TTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTSTAST 279
Query: 317 TISTSMPSTLSTSVKKNSRALSRLQGPSTTS*PQ 216
T +T ST +T+V ++ A S P+T+ P+
Sbjct: 280 TTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPE 313
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 35.5 bits (78), Expect = 0.037
Identities = 29/90 (32%), Positives = 41/90 (45%)
Frame = -3
Query: 494 LLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT 315
L TST T+PSTS++ +TS + ST + T S ST S ++T
Sbjct: 432 LTTSTASTSTTEPSTSTVTTSPSTSP-VTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVT 490
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPSTTS 225
ST+ PST +T +S S S +S
Sbjct: 491 TSTTAPSTSTTGPSSSSSTPSSTASSSVSS 520
Score = 32.3 bits (70), Expect = 0.34
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = -3
Query: 491 LTSTKLRPGTQP-STSSIKELFNTSSNL--NSTRYHTHKKLFTSLV*KFPTSKSTKWSHS 321
+TST T P STS++ +TS++ ST + FTS +S ST S
Sbjct: 286 VTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSS 345
Query: 320 LTISTSMPS-TLSTSV 276
TI++S S TLSTS+
Sbjct: 346 STITSSPSSTTLSTSI 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 27/80 (33%), Positives = 37/80 (46%)
Frame = -3
Query: 464 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLS 285
T+P+T+ +TS+ ST T TS V TS T S S T T+ ST S
Sbjct: 426 TEPTTTLTTSTASTSTTEPSTSTVTTSPS-TSPV----TSTVTSSSSSSTTVTTPTSTES 480
Query: 284 TSVKKNSRALSRLQGPSTTS 225
TS +S + PST++
Sbjct: 481 TSTSPSSTVTTSTTAPSTST 500
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 35.5 bits (78), Expect = 0.037
Identities = 29/90 (32%), Positives = 41/90 (45%)
Frame = -3
Query: 494 LLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT 315
L TST T+PSTS++ +TS + ST + T S ST S ++T
Sbjct: 432 LTTSTASTSTTEPSTSTVTTSPSTSP-VTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVT 490
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPSTTS 225
ST+ PST +T +S S S +S
Sbjct: 491 TSTTAPSTSTTGPSSSSSTPSSTASSSVSS 520
Score = 32.3 bits (70), Expect = 0.34
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = -3
Query: 491 LTSTKLRPGTQP-STSSIKELFNTSSNL--NSTRYHTHKKLFTSLV*KFPTSKSTKWSHS 321
+TST T P STS++ +TS++ ST + FTS +S ST S
Sbjct: 286 VTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSS 345
Query: 320 LTISTSMPS-TLSTSV 276
TI++S S TLSTS+
Sbjct: 346 STITSSPSSTTLSTSI 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 27/80 (33%), Positives = 37/80 (46%)
Frame = -3
Query: 464 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLS 285
T+P+T+ +TS+ ST T TS V TS T S S T T+ ST S
Sbjct: 426 TEPTTTLTTSTASTSTTEPSTSTVTTSPS-TSPV----TSTVTSSSSSSTTVTTPTSTES 480
Query: 284 TSVKKNSRALSRLQGPSTTS 225
TS +S + PST++
Sbjct: 481 TSTSPSSTVTTSTTAPSTST 500
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 32.3 bits (70), Expect = 0.34
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = -3
Query: 485 STKLRPGTQ--PSTSSIKELFNTSS-NLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT 315
ST P T PST S + L TS + S T ++ TS ST+ + S
Sbjct: 498 STTSGPTTSSGPSTVSERTLSTTSGPSTTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGP 557
Query: 314 ISTSMPSTLSTSVKKNSRALSRLQGPSTTS*P 219
++S PST S S + S GPSTTS P
Sbjct: 558 STSSGPSTASRSTVSTTSGPSTTSGPSTTSGP 589
Score = 30.7 bits (66), Expect = 1.0
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = -3
Query: 464 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLT---ISTSMPS 294
T PST+S TS +L ST + + +S+ S + S S T +TS PS
Sbjct: 363 TGPSTTSGSTASTTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQSTTSGPTTTSEPS 422
Query: 293 TLSTSVKKNSRALSRLQGPSTT 228
T S S ++ S GPSTT
Sbjct: 423 TTSGSTVSDTSGPSTTSGPSTT 444
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 350 TSKSTKWSHSLTISTSMPSTLSTSVKKNSRALSRLQGPSTTS*P 219
TS + S + +TS P+T S + R LS GPSTTS P
Sbjct: 486 TSGQSTSSGTTKSTTSGPTTSSGPSTVSERTLSTTSGPSTTSGP 529
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 458 PSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSK-STKWSHSLTISTSMPSTLST 282
PST+ + TSS ++ T S TS +TK + S ++S PST+S
Sbjct: 455 PSTTPGSTISTTSSASTTSGPSTSSGSTVSTTSGQSTSSGTTKSTTSGPTTSSGPSTVSE 514
Query: 281 SVKKNSRALSRLQGPSTTS 225
+ S GPSTTS
Sbjct: 515 RTLSTTSGPSTTSGPSTTS 533
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 396 PYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSK 274
P+ + LH GL +S +DK+ ++F+F AFNT + K
Sbjct: 120 PHHKYILH--GLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158
>Z81125-6|CAI79225.1| 234|Caenorhabditis elegans Hypothetical
protein T22A3.3b protein.
Length = 234
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = -3
Query: 524 PFNQYNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTS 345
P +L + LL + + QPSTS+ + N S S+R + + +V K
Sbjct: 64 PSVDVDLDMFLLPDCRYKQPVQPSTSTSRN--NVSQISGSSRLNGSTRHVAPIVPKVAMP 121
Query: 344 KSTKWSHSLTIS---TSMPSTLSTSVKKNSRALSRLQGPST 231
+++ S MP+T +++V NS A S P T
Sbjct: 122 SELSYANVKRSSGYVDYMPTTYNSNVTSNSSAASVPMSPGT 162
>Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical
protein T22A3.3a protein.
Length = 398
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = -3
Query: 524 PFNQYNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTS 345
P +L + LL + + QPSTS+ + N S S+R + + +V K
Sbjct: 228 PSVDVDLDMFLLPDCRYKQPVQPSTSTSRN--NVSQISGSSRLNGSTRHVAPIVPKVAMP 285
Query: 344 KSTKWSHSLTIS---TSMPSTLSTSVKKNSRALSRLQGPST 231
+++ S MP+T +++V NS A S P T
Sbjct: 286 SELSYANVKRSSGYVDYMPTTYNSNVTSNSSAASVPMSPGT 326
>AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown protein
protein.
Length = 318
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = -3
Query: 524 PFNQYNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTS 345
P +L + LL + + QPSTS+ + N S S+R + + +V K
Sbjct: 148 PSVDVDLDMFLLPDCRYKQPVQPSTSTSRN--NVSQISGSSRLNGSTRHVAPIVPKVAMP 205
Query: 344 KSTKWSHSLTIS---TSMPSTLSTSVKKNSRALSRLQGPST 231
+++ S MP+T +++V NS A S P T
Sbjct: 206 SELSYANVKRSSGYVDYMPTTYNSNVTSNSSAASVPMSPGT 246
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -3
Query: 494 LLTSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KF-PTSKSTKWSHSL 318
L+ T T P+T++ + +T+S+ ST T T++ PT+ ++ + +
Sbjct: 253 LVPETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTT 312
Query: 317 TISTSMPSTLST 282
T+ T+ PST ST
Sbjct: 313 TMQTTTPSTTST 324
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/90 (21%), Positives = 40/90 (44%)
Frame = -3
Query: 488 TSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIS 309
T+T T P+T++ T++ +T T + PT+ +T + + T+
Sbjct: 158 TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVP 217
Query: 308 TSMPSTLSTSVKKNSRALSRLQGPSTTS*P 219
T+ +T +T+ + + P+TT+ P
Sbjct: 218 TTTTTTPTTTTTTTTTPTTTTTTPTTTTTP 247
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -3
Query: 488 TSTKLRPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIS 309
T+T T P+T++ T++ T T T+ T+KST + T +
Sbjct: 249 TTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKT 308
Query: 308 TSMPSTLSTSVK 273
TS P+T +T+ K
Sbjct: 309 TSTPTTTTTTPK 320
>U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl
transferase protein 5 protein.
Length = 378
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 405 YQVPYTQEALHFVGLKISDVKVDKMV--TFFDHFDFDAFNTVYFS-KEELKSSLTVT 244
YQ+ Y Q F G I+ KV K+V T FD N++ E++K+S TVT
Sbjct: 29 YQINYNQRMGIFYGGNITFKKVPKVVIYTATPFFDVPIENSILRDCSEKIKNSCTVT 85
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 4715 EVEVELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 4876 EVEVELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 6158 EVEVELFFSQAEVFSGLELDLLMECSEYV 6186
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 5232 EVEVELFFSKAEVFSGLELDLLMECSEYV 5260
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 4715 EVEVELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 4876 EVEVELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 6178 EVEVELFFSQAEVFSGLELDLLMECSEYV 6206
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 5232 EVEVELFFSKAEVFSGLELDLLMECSEYV 5260
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 4715 EVEVELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 4876 EVEVELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 6178 EVEVELFFSQAEVFSGLELDLLMECSEYV 6206
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 253 ERALEFFFTEVDSVEGIEVEMVKECDHFV 339
E +E FF++ + G+E++++ EC +V
Sbjct: 5232 EVEVELFFSKAEVFSGLELDLLMECSEYV 5260
>AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans
alpha1,3-fucosyltransferase homologueprotein.
Length = 378
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 405 YQVPYTQEALHFVGLKISDVKVDKMV--TFFDHFDFDAFNTVYFS-KEELKSSLTVT 244
YQ+ Y Q F G I+ KV K+V T FD N++ E++K+S TVT
Sbjct: 29 YQINYNQRMGIFYGGNITFKKVPKVVIYTATPFFDVPIENSILRDCSEKIKNSCTVT 85
>AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical
protein B0205.4 protein.
Length = 399
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 512 YNLFLVLLTSTKLRPGTQPSTSSIKELFNTSSN 414
Y LFL L+ T+L P +P+T K +F S N
Sbjct: 21 YILFLFNLSKTRLTPEERPATYMKKNVFYQSGN 53
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 584 QFYQRSYEVNARRVLGAAPKPFNQ-YNLFLVL 492
Q Y R VNA + G P PF+Q Y F+ +
Sbjct: 179 QLYSRCLPVNAEKWFGHRPNPFSQRYQSFIAI 210
>Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical
protein T24C2.1 protein.
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Frame = -3
Query: 617 TNADLFEEDFLQFYQRSYEV-NARRVLGAAPKPFNQYNLFLVLLTSTKLRPGTQPSTSSI 441
T+ D + + + + + ++ N R GAA + Q +F + ST + T P TSS
Sbjct: 430 THKDPLKTEKTEKFMKLVQIENEDRNHGAALETTQQSRMFTTTMPSTMISTTTTPMTSSS 489
Query: 440 KELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSR 261
+ S + N T +K KS + SHSL T + + ++K S
Sbjct: 490 RTDKLPSEHFNHPELDTFEK----------PKKSFEKSHSLVQMTETTTAPAANLKFYST 539
Query: 260 ALSRLQGPSTT 228
S + TT
Sbjct: 540 TASTKKLTPTT 550
>AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane
protein RAM-5 protein.
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Frame = -3
Query: 617 TNADLFEEDFLQFYQRSYEV-NARRVLGAAPKPFNQYNLFLVLLTSTKLRPGTQPSTSSI 441
T+ D + + + + + ++ N R GAA + Q +F + ST + T P TSS
Sbjct: 430 THKDPLKTEKTEKFMKLVQIENEDRNHGAALETTQQSRMFTTTMPSTMISTTTTPMTSSS 489
Query: 440 KELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSR 261
+ S + N T +K KS + SHSL T + + ++K S
Sbjct: 490 RTDKLPSEHFNHPELDTFEK----------PKKSFEKSHSLVQMTETTTAPAANLKFYST 539
Query: 260 ALSRLQGPSTT 228
S + TT
Sbjct: 540 TASTKKLTPTT 550
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,442
Number of Sequences: 27780
Number of extensions: 266234
Number of successful extensions: 924
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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