Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1269
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    30   1.5  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    28   4.6  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 256  IRTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 146
            ++++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 905  LKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 265 KTNIRTNIDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLG 92
           K N    +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+G
Sbjct: 46  KVNSSGCVDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIG 103

Query: 91  D 89
           D
Sbjct: 104 D 104


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 320 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 460
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 401 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGNPTV*LNKALRWPSRVLTQCDFCPVL 568
           ++ R +F +  H  + PP  G++R   D GN        + W  +V++  DF  +L
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGND-------MDWCMQVISSDDFREIL 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,432
Number of Sequences: 27780
Number of extensions: 312842
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)