Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1268
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 31 0.67
06_01_0350 + 2534422-2535615 31 1.2
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 31 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.0
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 30 2.0
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.7
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 29 2.7
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.5
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.7
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 29 4.7
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 6.2
11_05_0087 + 18970741-18972702 28 6.2
07_03_0078 - 13147741-13148913 28 6.2
12_02_0877 - 23946449-23948284 28 8.2
05_04_0145 - 18391112-18392461,18392545-18392637 28 8.2
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 8.2
03_05_0565 + 25667391-25667696 28 8.2
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 467 NARTSTRPGTGASASRPNPTRPGP 396
+A T+TR +GA+ +RP PTRP P
Sbjct: 279 SAATTTRNNSGAAPARPVPTRPWP 302
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 158 PWNSNAQAEKKTLPGPLGGVFRP 90
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 470 HNARTSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTS 348
H RT PG G+S+ P P ++ S RS G + P S
Sbjct: 15 HVGRTPETPGRGSSSGSPAPGGSASKAVSFARSLGVHFPRS 55
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 15 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 179
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 256 SSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 83
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 82 LPRRTLVFKDEGTI 41
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 433 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 344
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 431 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 276
SAS P+P +P P S SL R+ S +Y G W A + R
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 433 HPLPVQTRHAPVLRANP 383
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 427 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 314
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 303 TCCGYGYEPARHLHVHPHLNFQGP 232
+CCG+ R+ + PHLN GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 455 STRPGTGASASRPNPTRPGPQSQSLFRSY 369
+TRPG A+ N T GPQ +FR +
Sbjct: 904 TTRPGKKLMATTANRTSKGPQDNRVFREH 932
>11_05_0087 + 18970741-18972702
Length = 653
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 263
VR P P+ GR+G RE R + + + G+ VR
Sbjct: 56 VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 568 SGPAFSGLPRIFLAVSRVGFVSCAI 642
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>12_02_0877 - 23946449-23948284
Length = 611
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 455 STRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSL 345
ST + ASA RP PT P + L + ++LP L
Sbjct: 4 STAASSSASAVRPPPTWGAPSQRRLVEQHLASLPRGL 40
>05_04_0145 - 18391112-18392461,18392545-18392637
Length = 480
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 460 EHRPDPAPAHPLPVQTRHAPVLRANPYS 377
+H AP+ P P + RHAP A YS
Sbjct: 42 DHGSSNAPSPPTPRRARHAPATTAVTYS 69
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -1
Query: 319 ALHLGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 179
A H G I VRT + TS A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 295 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 149
RI++ A PR SP +R A++ S+ +EP P HGT
Sbjct: 40 RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,302,944
Number of Sequences: 37544
Number of extensions: 502148
Number of successful extensions: 2038
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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