Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1268
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein. 33 1.3
AL132795-2|CAI20497.1| 716|Homo sapiens protein ( ial spokehead... 33 1.3
AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA seq... 33 1.3
AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens ... 31 4.0
AL031133-3|CAM28211.1| 353|Homo sapiens zinc finger CCCH-type c... 31 5.2
BC009062-1|AAH09062.1| 198|Homo sapiens Unknown (protein for IM... 30 6.9
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 30 6.9
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 30 6.9
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 30 6.9
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 30 6.9
>BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein.
Length = 600
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 310 LGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLP 170
LG+ R W A SP+ S PE S E+ + P R S S P+ P
Sbjct: 17 LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63
>AL132795-2|CAI20497.1| 716|Homo sapiens protein ( ial
spokehead-like 1, a novel ).).
Length = 716
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 310 LGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLP 170
LG+ R W A SP+ S PE S E+ + P R S S P+ P
Sbjct: 17 LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63
>AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA
sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
Contains a gene similar to murine radial spokehead-like
1, a novel ).
Length = 469
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 310 LGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLP 170
LG+ R W A SP+ S PE S E+ + P R S S P+ P
Sbjct: 17 LGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSP 63
>AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens
cDNA FLJ43705 fis, clone TESOP2001818. ).
Length = 321
Score = 31.1 bits (67), Expect = 4.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 6 PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 113
P+P G+ T ++PS+L+ ++ G P W ED+ R
Sbjct: 228 PLPPKGTETFFCVLPSALRAALSCG-PSWGEDSGPR 262
>AL031133-3|CAM28211.1| 353|Homo sapiens zinc finger CCCH-type
containing 12D protein.
Length = 353
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 506 PHYIKILTR*NEHNARTSTRPGTGASASRPNPTRPG 399
PH+ ++ +E A+T RPG GA RP P PG
Sbjct: 280 PHHAQLAVA-DELRAKTGARPGAGAEEQRP-PRAPG 313
>BC009062-1|AAH09062.1| 198|Homo sapiens Unknown (protein for
IMAGE:3875076) protein.
Length = 198
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 647 VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFGPHYIKILTR*NE 471
V + PT +R GRP P P + RR S S + + +
Sbjct: 20 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 77
Query: 470 HNARTSTRPGTGASASRPNPTRPGPQS 390
++ +S+ + +S+S P+P +PGPQ+
Sbjct: 78 SSSSSSSSSSSSSSSSSPSPAKPGPQA 104
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 647 VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFGPHYIKILTR*NE 471
V + PT +R GRP P P + RR S S + + +
Sbjct: 1606 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 1663
Query: 470 HNARTSTRPGTGASASRPNPTRPGPQS 390
++ +S+ + +S+S P+P +PGPQ+
Sbjct: 1664 SSSSSSSSSSSSSSSSSPSPAKPGPQA 1690
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 647 VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFGPHYIKILTR*NE 471
V + PT +R GRP P P + RR S S + + +
Sbjct: 2574 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 2631
Query: 470 HNARTSTRPGTGASASRPNPTRPGPQS 390
++ +S+ + +S+S P+P +PGPQ+
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGPQA 2658
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
Length = 1275
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 647 VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFGPHYIKILTR*NE 471
V + PT +R GRP P P + RR S S + + +
Sbjct: 1097 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 1154
Query: 470 HNARTSTRPGTGASASRPNPTRPGPQS 390
++ +S+ + +S+S P+P +PGPQ+
Sbjct: 1155 SSSSSSSSSSSSSSSSSPSPAKPGPQA 1181
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 647 VPIAHETKPTRLTARKIR-GRPENAGPDPVRNVRRFSRVSY*IYTVFGPHYIKILTR*NE 471
V + PT +R GRP P P + RR S S + + +
Sbjct: 2622 VALKRVPSPTPAPKEAVREGRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 2679
Query: 470 HNARTSTRPGTGASASRPNPTRPGPQS 390
++ +S+ + +S+S P+P +PGPQ+
Sbjct: 2680 SSSSSSSSSSSSSSSSSPSPAKPGPQA 2706
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,008,526
Number of Sequences: 237096
Number of extensions: 2649362
Number of successful extensions: 9462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9454
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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