Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1268
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    31   1.0  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    29   4.2  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   5.6  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 268 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 161
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 702 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 737


>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 268 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 161
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 268 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 161
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
           protein F16A11.3b protein.
          Length = 1364

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 268 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 161
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 702 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 737


>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical
           protein F16A11.3a protein.
          Length = 1490

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 268 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 161
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical
           protein F16A11.3c protein.
          Length = 1046

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 268 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 161
           SPR  S  F  +   I T P+ + +S SEP  P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 428 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 276
           A  P P+ P P ++   +S   NLP S+   +   R G SP  W P A   TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 428 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 276
           A  P P+ P P ++   +S   NLP S+   +   R G SP  W P A   TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 458 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 342
           TST P T  S + P P+ P     S      SNL ++LT
Sbjct: 297 TSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 440 TGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 309
           T A     +P +  P +Q LF S+G  LP      I +   SSP
Sbjct: 11  TMAITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -1

Query: 466 THEHRPDPAPA---HPLPVQTRHAPVLRANP 383
           +HEH P PAPA    P PVQ       +A P
Sbjct: 330 SHEHSPSPAPAPVSSPTPVQQYQQSYSQAQP 360


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 401 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYILT*IFKVRR 228
           GP+      S   N  T       S   SS W P A  G N   +ST ++T  F +++
Sbjct: 339 GPELSLTLSSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTFNIKK 396


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 401 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYILT*IFKVRR 228
           GP+      S   N  T       S   SS W P A  G N   +ST ++T  F +++
Sbjct: 339 GPELSLTLSSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTFNIKK 396


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 489 YFNIMRPKN--CIYLI*HSRKSSYVSDWIRTR 578
           Y   MRP    C Y I  SR S  VSDW+ +R
Sbjct: 550 YVAAMRPDGYGCFYRIGKSRISVAVSDWVSSR 581


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 239 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 111
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -1

Query: 280 TGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG-FHGTRTLRQKRKLFPDLSA 104
           + +T P +SSP+ S  + +  T       + S+   PS+     T T   +  + P+ S 
Sbjct: 379 SSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGST 438

Query: 103 ASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGT 2
           ASS   G    T     E T   TVP  GS +GT
Sbjct: 439 ASS-PTGSTGSTFSVATEVTSQSTVP-SGSSLGT 470


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -1

Query: 280 TGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG-FHGTRTLRQKRKLFPDLSA 104
           + +T P +SSP+ S  + +  T       + S+   PS+     T T   +  + P+ S 
Sbjct: 586 SSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGST 645

Query: 103 ASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGT 2
           ASS   G    T     E T   TVP  GS +GT
Sbjct: 646 ASS-PTGSTGSTFSVATEVTSQSTVP-SGSSLGT 677


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -1

Query: 280 TGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG-FHGTRTLRQKRKLFPDLSA 104
           + +T P +SSP+ S  + +  T       + S+   PS+     T T   +  + P+ S 
Sbjct: 586 SSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGST 645

Query: 103 ASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGT 2
           ASS   G    T     E T   TVP  GS +GT
Sbjct: 646 ASS-PTGSTGSTFSVATEVTSQSTVP-SGSSLGT 677


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 223 IRTPPQMRCSSRSEPYLPSIGFHGT 149
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 199 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 26
           C++   P+L  I    T+ +RQ   + P+L +A   H       + FK E     T+P
Sbjct: 80  CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,175
Number of Sequences: 27780
Number of extensions: 392714
Number of successful extensions: 1361
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)