Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1267
(541 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing f... 173 2e-42
UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=... 124 1e-27
UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing f... 118 9e-26
UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2... 118 9e-26
UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subu... 115 8e-25
UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome sh... 98 1e-19
UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p... 97 2e-19
UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein; ... 71 2e-11
UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3; ... 67 2e-10
UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein... 60 2e-08
UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07
UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2) ... 57 3e-07
UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary... 56 4e-07
UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4; ... 54 2e-06
UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11... 52 1e-05
UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma j... 51 1e-05
UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core eud... 50 5e-05
UniRef50_A4VDP3 Cluster: Putative uncharacterized protein; n=1; ... 49 6e-05
UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole... 48 1e-04
UniRef50_A5K369 Cluster: U2 snRNP auxiliary factor, putative; n=... 48 1e-04
UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=... 46 4e-04
UniRef50_Q3E9P9 Cluster: Uncharacterized protein At4g36690.3; n=... 46 4e-04
UniRef50_O23212 Cluster: Splicing factor-like protein; n=22; Euk... 46 4e-04
UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, wh... 46 4e-04
UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KE... 46 7e-04
UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genom... 44 0.003
UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein PF07_0... 44 0.003
UniRef50_UPI0000498FCC Cluster: U2 snRNP auxiliary factor large ... 43 0.004
UniRef50_Q5CSE3 Cluster: Splicing factor U2AF like SnRNP auxilar... 43 0.005
UniRef50_Q10S20 Cluster: RNA recognition motif family protein, e... 41 0.016
UniRef50_A7AR94 Cluster: Putative uncharacterized protein; n=1; ... 41 0.021
UniRef50_Q4UCN0 Cluster: Snrnp splicing factor (U2AF), putative;... 40 0.037
UniRef50_A7TTR9 Cluster: Putative uncharacterized protein; n=1; ... 37 0.26
UniRef50_Q7RNT2 Cluster: 19096-22891; n=6; Plasmodium|Rep: 19096... 37 0.34
UniRef50_UPI0000DB6CD5 Cluster: PREDICTED: similar to no on or o... 36 0.60
UniRef50_UPI00006CBE3B Cluster: hypothetical protein TTHERM_0031... 36 0.60
UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA... 36 0.60
UniRef50_O22794 Cluster: Putative splicing factor U2AF large cha... 36 0.60
UniRef50_Q4N3F2 Cluster: U2 small nuclear ribonucleoprotein, aux... 36 0.60
UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyc... 36 0.60
UniRef50_A1CA44 Cluster: RNP domain protein; n=13; Pezizomycotin... 36 0.60
UniRef50_A7AU39 Cluster: RNA recognition motif (RRM)-containing ... 36 0.79
UniRef50_Q57W18 Cluster: RNA-binding protein, putative; n=1; Try... 35 1.0
UniRef50_Q7RYH6 Cluster: Predicted protein; n=1; Neurospora cras... 35 1.4
UniRef50_Q9LUK6 Cluster: Similarity to RNA-binding protein; n=3;... 34 2.4
UniRef50_Q22VW0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.4
UniRef50_Q22BY2 Cluster: Leishmanolysin family protein; n=10; Te... 34 2.4
UniRef50_A7PMG0 Cluster: Chromosome chr14 scaffold_21, whole gen... 33 3.2
UniRef50_A7PJ01 Cluster: Chromosome chr13 scaffold_17, whole gen... 33 3.2
UniRef50_Q9VHP3 Cluster: CG8021-PA; n=3; Diptera|Rep: CG8021-PA ... 33 3.2
UniRef50_Q750E5 Cluster: AGR010Cp; n=2; Saccharomycetaceae|Rep: ... 33 3.2
UniRef50_Q2U8W5 Cluster: Predicted protein; n=1; Aspergillus ory... 33 3.2
UniRef50_A5DKP1 Cluster: Putative uncharacterized protein; n=1; ... 33 3.2
UniRef50_A6Q9E1 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_A5GEF6 Cluster: RNP-1 like RNA-binding protein; n=1; Ge... 33 4.2
UniRef50_Q6ID24 Cluster: At4g12630; n=6; Arabidopsis thaliana|Re... 33 4.2
UniRef50_Q57UQ0 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_Q4UHC8 Cluster: Splicing factor, putative; n=3; Piropla... 33 4.2
UniRef50_Q75CJ0 Cluster: ACL071Cp; n=2; Saccharomycetaceae|Rep: ... 33 4.2
UniRef50_Q9U1N0 Cluster: Hrp65 protein; n=3; Chironomus tentans|... 33 4.2
UniRef50_UPI00006CBD24 Cluster: hypothetical protein TTHERM_0015... 33 5.6
UniRef50_UPI00006A1C5B Cluster: Uncharacterized protein C11orf56... 33 5.6
UniRef50_Q70JP5 Cluster: Putative DIP2 protein; n=5; BEP clade|R... 33 5.6
UniRef50_A5KEB3 Cluster: mRNA processing protein, putative; n=1;... 33 5.6
UniRef50_P34761 Cluster: Protein WHI3; n=2; Saccharomyces cerevi... 33 5.6
UniRef50_UPI0000F2E718 Cluster: PREDICTED: hypothetical protein;... 32 7.3
UniRef50_Q7ZUX2 Cluster: Cstf2 protein; n=2; Danio rerio|Rep: Cs... 32 7.3
UniRef50_Q751V3 Cluster: AFR722Cp; n=2; Saccharomycetaceae|Rep: ... 32 7.3
UniRef50_Q6C4U4 Cluster: Similarities with tr|O13845 Schizosacch... 32 7.3
UniRef50_A6SSI6 Cluster: Putative uncharacterized protein; n=2; ... 32 7.3
UniRef50_Q84W91 Cluster: Zinc finger CCCH domain-containing prot... 32 7.3
UniRef50_A0LUH9 Cluster: Prepilin-type cleavage/methylation-like... 32 9.7
UniRef50_Q9LZ65 Cluster: Rna binding protein-like; n=7; Magnolio... 32 9.7
UniRef50_Q9C5A7 Cluster: Putative uncharacterized protein At5g08... 32 9.7
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 32 9.7
UniRef50_Q4DDV5 Cluster: Putative uncharacterized protein; n=2; ... 32 9.7
UniRef50_Q4P9P1 Cluster: Putative uncharacterized protein; n=1; ... 32 9.7
UniRef50_A5DG12 Cluster: Putative uncharacterized protein; n=1; ... 32 9.7
UniRef50_O01159 Cluster: Probable splicing factor, arginine/seri... 32 9.7
UniRef50_P10768 Cluster: S-formylglutathione hydrolase; n=136; c... 32 9.7
>UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing
factor u2af large subunit; n=2; Apocrita|Rep: PREDICTED:
similar to splicing factor u2af large subunit - Nasonia
vitripennis
Length = 547
Score = 173 bits (421), Expect = 2e-42
Identities = 83/90 (92%), Positives = 85/90 (94%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEE MEFFNQQMHLSGLA
Sbjct: 207 AAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLSGLA 266
Query: 428 QAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
QAAGNPVLACQINLDKNFAFLEFRS+ T
Sbjct: 267 QAAGNPVLACQINLDKNFAFLEFRSIDETT 296
Score = 59.3 bits (137), Expect = 6e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +3
Query: 183 LYWDVPPPGFEHITPLQYKAMQAA 254
LYWDVPPPGFEHITPLQYKAMQAA
Sbjct: 185 LYWDVPPPGFEHITPLQYKAMQAA 208
>UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=7;
Bilateria|Rep: Splicing factor U2AF 65 kDa subunit -
Caenorhabditis elegans
Length = 496
Score = 124 bits (300), Expect = 1e-27
Identities = 59/90 (65%), Positives = 70/90 (77%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE ++FFNQQMHL GLA
Sbjct: 159 AAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLA 214
Query: 428 QAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
QA GNP+L CQINLDKNFAF+EFRS+ T
Sbjct: 215 QAPGNPILLCQINLDKNFAFIEFRSIDETT 244
Score = 42.3 bits (95), Expect = 0.007
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
+WDVPP GFE TP++YK MQAA
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAA 160
>UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing
factor U2AF homolog - mouse; n=2; Bos taurus|Rep:
PREDICTED: similar to splicing factor U2AF homolog -
mouse - Bos taurus
Length = 330
Score = 118 bits (284), Expect = 9e-26
Identities = 59/81 (72%), Positives = 64/81 (79%)
Frame = +2
Query: 275 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 454
+A TP VPVVGS +TRQARRLYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA
Sbjct: 130 LAVTP-TPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 188
Query: 455 CQINLDKNFAFLEFRSLVNDT 517
QIN DKNFAFLEFRS+ T
Sbjct: 189 VQINQDKNFAFLEFRSVDETT 209
Score = 56.8 bits (131), Expect = 3e-07
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
YWDVPPPGFEHITP+QYKAMQAA
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAA 113
>UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)); n=44; Eumetazoa|Rep:
Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor
65 kDa subunit) (U2 snRNP auxiliary factor large
subunit) (hU2AF(65)) - Homo sapiens (Human)
Length = 475
Score = 118 bits (284), Expect = 9e-26
Identities = 59/81 (72%), Positives = 64/81 (79%)
Frame = +2
Query: 275 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 454
+A TP VPVVGS +TRQARRLYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA
Sbjct: 130 LAVTP-TPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 188
Query: 455 CQINLDKNFAFLEFRSLVNDT 517
QIN DKNFAFLEFRS+ T
Sbjct: 189 VQINQDKNFAFLEFRSVDETT 209
Score = 56.8 bits (131), Expect = 3e-07
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
YWDVPPPGFEHITP+QYKAMQAA
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAA 113
>UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subunit
(U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)).; n=1; Takifugu
rubripes|Rep: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)). - Takifugu rubripes
Length = 555
Score = 115 bits (276), Expect = 8e-25
Identities = 60/98 (61%), Positives = 67/98 (68%), Gaps = 8/98 (8%)
Frame = +2
Query: 245 ASGGQIPANIVADT--------PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 400
++ GQIPA + T VPVVGS +TRQARRLYVGNIPFG+TEE M+FFN
Sbjct: 124 SAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFN 183
Query: 401 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSLVND 514
QM L GL QA GNPVLA QIN DKNFAFLE R+ D
Sbjct: 184 AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEVRTQPED 221
Score = 53.6 bits (123), Expect = 3e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQ 248
YWDVPPPGFEHITP+QYKAMQ
Sbjct: 78 YWDVPPPGFEHITPMQYKAMQ 98
>UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 3 SCAF14679, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 600
Score = 98.3 bits (234), Expect = 1e-19
Identities = 55/85 (64%), Positives = 62/85 (72%), Gaps = 9/85 (10%)
Frame = +2
Query: 272 IVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE--------EETM-EFFNQQMHLSGL 424
+ A TP VPV GS +TRQARRLYVGNIPFG+TE +E+M EFFN QM L+GL
Sbjct: 151 VAAPTP---VPVAGSQMTRQARRLYVGNIPFGLTEALRRLCSPQESMAEFFNAQMRLAGL 207
Query: 425 AQAAGNPVLACQINLDKNFAFLEFR 499
+QA NPVLA QIN DKNFAFLE R
Sbjct: 208 SQAPSNPVLAVQINQDKNFAFLEVR 232
Score = 54.4 bits (125), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQ 248
YWDVPPPGFEHITPLQYKAMQ
Sbjct: 89 YWDVPPPGFEHITPLQYKAMQ 109
>UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p -
Drosophila melanogaster (Fruit fly)
Length = 449
Score = 97.1 bits (231), Expect = 2e-19
Identities = 50/91 (54%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQI + I++D S ITRQARRLYVGNIPFGVT+EE M+FFN Q+ G
Sbjct: 82 ASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFE 141
Query: 428 QAA-----GNPVLACQINLDKNFAFLEFRSL 505
+ GN VL CQ NL+KNFAFLEFRS+
Sbjct: 142 AKSSHYMDGNAVLTCQTNLEKNFAFLEFRSI 172
Score = 38.7 bits (86), Expect = 0.085
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 189 WDVPPPGFEHITPLQYKAMQAA 254
WD+PP G+ H+TP Q+KAM A+
Sbjct: 62 WDIPPEGYNHLTPQQHKAMLAS 83
>UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 671
Score = 70.5 bits (165), Expect = 2e-11
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 502
+Q+RR+YVGNIP G+++ E MEFFN + + L G PV+ CQIN K FAF+EFRS
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQINAPKCFAFIEFRS 323
>UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Ustilago maydis (Smut fungus)
Length = 727
Score = 67.3 bits (157), Expect = 2e-10
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 245 ASGGQIPANIVADTPQAAVP----VVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMH 412
A GG P N Q VP + RQARRLYVGNI E+ + FFN+QM
Sbjct: 319 AHGGYGPNNGSHPPSQQQVPSPAELAAQNANRQARRLYVGNITHQANEQNIVAFFNEQML 378
Query: 413 LSGLAQAAGNPVLACQINLDKNFAFLEFR 499
L G P ++ Q+N+DK +AF+EFR
Sbjct: 379 KLKLGTEPGEPAVSAQVNVDKGYAFVEFR 407
>UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein,
putative; n=2; Filobasidiella neoformans|Rep: RRNA
primary transcript binding protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 651
Score = 60.5 bits (140), Expect = 2e-08
Identities = 33/81 (40%), Positives = 44/81 (54%)
Frame = +2
Query: 260 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG 439
IPA VA + PV RQ RLY+G I + E++ +FFN M G+A
Sbjct: 256 IPATFVAGAFPPSNPV------RQNNRLYIGGIKEDMQEQQIQDFFNNLMKEKGMADGKE 309
Query: 440 NPVLACQINLDKNFAFLEFRS 502
+PV CQIN D+NFAF+E +
Sbjct: 310 DPVKQCQINNDRNFAFIELHT 330
>UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 606
Score = 57.6 bits (133), Expect = 2e-07
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +2
Query: 278 ADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG-NPVLA 454
A T AA G++ +Q++RLYV N+P G T EE +EFFN Q L+GL +G +P L+
Sbjct: 269 AGTASAAALAPGAS--KQSKRLYVHNLPSGTTSEELLEFFNLQ--LNGLNVVSGQDPCLS 324
Query: 455 CQINLDKNFAFLEFRS 502
QI K +A LEF++
Sbjct: 325 AQIASSKTYAALEFKT 340
>UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2)
small nuclear RNA auxiliary factor 2,; n=1; Monodelphis
domestica|Rep: PREDICTED: similar to U2 (RNU2) small
nuclear RNA auxiliary factor 2, - Monodelphis domestica
Length = 386
Score = 56.8 bits (131), Expect = 3e-07
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
YWDVPPPGFEHITP+QYKAMQAA
Sbjct: 91 YWDVPPPGFEHITPMQYKAMQAA 113
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 275 VADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 376
+A TP VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 130 LAVTP-TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary
factor large subunit; 3 RRM domains; n=3;
Cryptosporidium|Rep: Splicing factor U2AF U2 snRNP
auxiliary factor large subunit; 3 RRM domains -
Cryptosporidium parvum Iowa II
Length = 492
Score = 56.4 bits (130), Expect = 4e-07
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Frame = +2
Query: 245 ASGGQIPANI----VADTPQAAVPVVGST--ITRQARRLYVGNIPFGVTEEETMEFFNQQ 406
AS +IP++I + + A + ST ++ R +YVGN+P G+T E +E+ N+
Sbjct: 80 ASYSEIPSDINQCELTEIVPAGTAYLNSTSFTSKPLREVYVGNLPQGITVTELLEYINRS 139
Query: 407 MHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
+ + ++ GNPV++ IN D +AF E RS+
Sbjct: 140 IIKNSVSHTNGNPVVSAWINSDGKYAFCECRSI 172
>UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 620
Score = 54.4 bits (125), Expect = 2e-06
Identities = 26/62 (41%), Positives = 42/62 (67%)
Frame = +2
Query: 317 TITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
T +RQ++RL + N+P G TE+ + F N Q++ + +A+ +P LACQ+ D +FA +EF
Sbjct: 287 TNSRQSKRLILSNLPAGTTEDSLISFLNLQLNGLNVIEAS-DPCLACQMAPDGSFAMVEF 345
Query: 497 RS 502
RS
Sbjct: 346 RS 347
>UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11;
Pezizomycotina|Rep: Contig An07c0080, complete genome -
Aspergillus niger
Length = 598
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 502
+RQA+RL+V NIP VT E + FFN Q++ + Q+ +P ++ Q+ D FA LEF+S
Sbjct: 248 SRQAKRLFVYNIPESVTGETLLAFFNVQLNGLNVIQSV-DPCISAQVAQDHTFALLEFKS 306
>UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09464 protein - Schistosoma
japonicum (Blood fluke)
Length = 159
Score = 51.2 bits (117), Expect = 1e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
YWDVPPPGFEH+TP QYKA+Q +
Sbjct: 127 YWDVPPPGFEHVTPAQYKALQTS 149
>UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core
eudicotyledons|Rep: RNA-binding region RNP-1 - Medicago
truncatula (Barrel medic)
Length = 257
Score = 49.6 bits (113), Expect = 5e-05
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
TR ARR+YVG +P E+ FF+Q M + G + +G+ V+ IN +K FAF+E R
Sbjct: 174 TRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMR 233
Query: 500 SL 505
++
Sbjct: 234 TV 235
>UniRef50_A4VDP3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 471
Score = 49.2 bits (112), Expect = 6e-05
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQ---AAGNPVLACQINLDKNFAFLEF 496
R ARRLY+GNIP + +E E+ + + +G Q + NP++ C+I+ FAF E
Sbjct: 31 RHARRLYIGNIPETINQEYLSEWLYRSLEAAGGLQPSLPSENPIVKCEIDPKGRFAFTEL 90
Query: 497 RSLVNDT 517
RS+ T
Sbjct: 91 RSIEETT 97
>UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4753,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 351
Score = 48.0 bits (109), Expect = 1e-04
Identities = 27/46 (58%), Positives = 30/46 (65%)
Frame = +2
Query: 239 GDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 376
G A G+ A TP VPV GS +TRQARRLYVGN PFG+TE
Sbjct: 111 GAAGHGRQRGRGGAPTP---VPVAGSQMTRQARRLYVGNNPFGLTE 153
Score = 43.2 bits (97), Expect = 0.004
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3
Query: 198 PPPGFEHITPLQYKAMQ 248
PPPGFEHITPLQYKAMQ
Sbjct: 76 PPPGFEHITPLQYKAMQ 92
>UniRef50_A5K369 Cluster: U2 snRNP auxiliary factor, putative; n=5;
Plasmodium|Rep: U2 snRNP auxiliary factor, putative -
Plasmodium vivax
Length = 914
Score = 48.0 bits (109), Expect = 1e-04
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQQMHL----SGLAQAAGN----PVLACQI-NLDKN 478
++ R+LY+GNIP +EE ++FFN + S L G+ P+L C+I N++
Sbjct: 541 KKQRKLYIGNIPPNSKQEELIDFFNNTLASIIKDSSLEIKIGDIVLLPILKCEIFNVESR 600
Query: 479 FAFLEFRSL 505
F FLEFRSL
Sbjct: 601 FCFLEFRSL 609
>UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=2;
Arabidopsis thaliana|Rep: Uncharacterized protein
At2g33435.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 979
Score = 46.4 bits (105), Expect = 4e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEF 496
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEF 932
>UniRef50_Q3E9P9 Cluster: Uncharacterized protein At4g36690.3; n=9;
Magnoliophyta|Rep: Uncharacterized protein At4g36690.3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 565
Score = 46.4 bits (105), Expect = 4e-04
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 500 SL 505
S+
Sbjct: 295 SV 296
>UniRef50_O23212 Cluster: Splicing factor-like protein; n=22;
Eukaryota|Rep: Splicing factor-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 573
Score = 46.4 bits (105), Expect = 4e-04
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 500 SL 505
S+
Sbjct: 295 SV 296
>UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_86,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 402
Score = 46.4 bits (105), Expect = 4e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
A RLY+GN+P V ++ + QQM G G+PV+ Q+ + + F++FRS+
Sbjct: 87 AVRLYLGNLPDNVDKDHLHNYIRQQMESHGAVLDPGDPVIQVQLQPGQKYCFVQFRSI 144
>UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KED -
Plasmodium yoelii yoelii
Length = 858
Score = 45.6 bits (103), Expect = 7e-04
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 287 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ-QMHLSGLAQAAGNPVLACQI 463
P+ + + + + AR LYVGNIP + +E ++F N + L N L I
Sbjct: 399 PELGLSTIDANAEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENENENICLKACI 458
Query: 464 NLDKNFAFLEFRSLVNDTGN 523
D +AF+EFRSL DT N
Sbjct: 459 RGDTRYAFVEFRSL-QDTSN 477
>UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 902
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEF 496
TR RRLYV N+P +E+ ME N + SG+ G P ++C I+ +K A +EF
Sbjct: 423 TRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEF 481
>UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein
PF07_0066; n=3; Plasmodium|Rep: Putative uncharacterized
protein PF07_0066 - Plasmodium falciparum (isolate 3D7)
Length = 1125
Score = 43.6 bits (98), Expect = 0.003
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 299 VPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ-QMHLSGLAQAAGNPVLACQINLDK 475
+P + I + AR LYVGNIP + +E +++ N + L N L I D
Sbjct: 639 LPTIDVNIEKTARELYVGNIPQHIDIQEIVKYLNSCLLILYNKENENENICLKACIRGDT 698
Query: 476 NFAFLEFRSLVNDTGN 523
++AF+EFR+ + DT N
Sbjct: 699 HYAFVEFRN-IQDTSN 713
>UniRef50_UPI0000498FCC Cluster: U2 snRNP auxiliary factor large
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U2
snRNP auxiliary factor large subunit - Entamoeba
histolytica HM-1:IMSS
Length = 712
Score = 43.2 bits (97), Expect = 0.004
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQA--AGNPVLACQINLDKNFAFLEFR 499
R A+R+YVGNI +E++ ++ FN+ M + + ++N ++++AFLEFR
Sbjct: 139 RAAKRIYVGNINSSTSEKDIVDAFNEAMRRGDYVDKNDTRDIITHIEVNYERSYAFLEFR 198
Query: 500 SL 505
+L
Sbjct: 199 TL 200
>UniRef50_Q5CSE3 Cluster: Splicing factor U2AF like SnRNP auxilary
factor large subunit, RRM domain; n=2;
Cryptosporidium|Rep: Splicing factor U2AF like SnRNP
auxilary factor large subunit, RRM domain -
Cryptosporidium parvum Iowa II
Length = 330
Score = 42.7 bits (96), Expect = 0.005
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 323 TRQARRLYVGNIP--FGVTEEETMEFFNQQMHLSGLA-QAAGNPVLACQINLDK-NFAFL 490
TR+ RRLY GN+P G+TE + Q+M L GL NP+L K N+ F+
Sbjct: 52 TRRFRRLYFGNLPINLGLTESSFQQIVWQEMALRGLCLNPNENPILCVWFAQKKGNYGFV 111
Query: 491 EFRSL 505
EFR++
Sbjct: 112 EFRTV 116
>UniRef50_Q10S20 Cluster: RNA recognition motif family protein,
expressed; n=7; Oryza sativa|Rep: RNA recognition motif
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 964
Score = 41.1 bits (92), Expect = 0.016
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA--QAAGNPVLACQINLDKNFAFLEF 496
TR RRL++ N+P TE+ + N+ + S + Q + P L+C IN DK AF+EF
Sbjct: 470 TRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKRQAFVEF 529
>UniRef50_A7AR94 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 400
Score = 40.7 bits (91), Expect = 0.021
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 502
T+ R +Y+GNIP +EF N + GNP I+ D ++AF+E R+
Sbjct: 21 TKPYREIYIGNIPPQADVNNLLEFLNDALTAVNGTSIPGNPCQKGWISADSHYAFVEMRT 80
Query: 503 L 505
+
Sbjct: 81 M 81
>UniRef50_Q4UCN0 Cluster: Snrnp splicing factor (U2AF), putative;
n=2; Theileria|Rep: Snrnp splicing factor (U2AF),
putative - Theileria annulata
Length = 486
Score = 39.9 bits (89), Expect = 0.037
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +2
Query: 284 TPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 463
T Q+ + +GS + R +Y+GNIP E M+ NQ + GNP L I
Sbjct: 90 TAQSGLEGIGS---KAFREIYIGNIPPVGDIEILMDIINQALISVNGTSMPGNPCLKGWI 146
Query: 464 NLDKNFAFLEFRSL 505
+ D ++AF+E R++
Sbjct: 147 SSDGHYAFIELRTM 160
>UniRef50_A7TTR9 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 288
Score = 37.1 bits (82), Expect = 0.26
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Frame = +2
Query: 236 QGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHL 415
+G + GG + P + + + R LYV N+P+ T+EE EFF L
Sbjct: 140 RGGSRGGFRSHGLAVPAPPRKEKIPLTEMERSKDTLYVNNVPYYATKEELAEFFGTTPEL 199
Query: 416 SGLAQAAGNPVLACQI----NLDKNFAFLEFRSLVNDTGN 523
L + ++ +++ AF+ F L +D N
Sbjct: 200 VVLPMRRMKDMRTKRVFFSKRMNRGIAFVTFADLTSDISN 239
>UniRef50_Q7RNT2 Cluster: 19096-22891; n=6; Plasmodium|Rep:
19096-22891 - Plasmodium yoelii yoelii
Length = 546
Score = 36.7 bits (81), Expect = 0.34
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 323 TRQARRLYVGNIP--FGVTEEETMEFFNQQMHLSGLAQAAG-NPVLACQINLDK-NFAFL 490
TR+ RRLY GN+P G+TE E +M NPVL DK N+ F+
Sbjct: 256 TRKLRRLYFGNLPLHLGLTENAFQEIVWDEMKKRKFCNNENINPVLYVWFAKDKGNYGFV 315
Query: 491 EFRSLVNDT 517
EF S V +T
Sbjct: 316 EF-STVEET 323
>UniRef50_UPI0000DB6CD5 Cluster: PREDICTED: similar to no on or off
transient A CG4211-PB, isoform B; n=1; Apis
mellifera|Rep: PREDICTED: similar to no on or off
transient A CG4211-PB, isoform B - Apis mellifera
Length = 565
Score = 35.9 bits (79), Expect = 0.60
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSLVN 511
RLY+GN+ VTEEE + F Q +S L +N +KNFAFL VN
Sbjct: 151 RLYIGNLTNDVTEEEIQQMFQQYGEISELF-----------VNKEKNFAFLRMDYRVN 197
>UniRef50_UPI00006CBE3B Cluster: hypothetical protein
TTHERM_00318730; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00318730 - Tetrahymena
thermophila SB210
Length = 459
Score = 35.9 bits (79), Expect = 0.60
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 502
R+LY+GNIP G+ + N + + Q G+ ++ I+ + N+ F EFR+
Sbjct: 203 RKLYIGNIPPGLQPVKCQLMINSALKQLKVNQEPGDSCVSIWISPEGNYGFAEFRT 258
>UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA
subunit 2; n=6; Bilateria|Rep: Cleavage stimulation
factor, 3' pre-RNA subunit 2 - Mus musculus (Mouse)
Length = 554
Score = 35.9 bits (79), Expect = 0.60
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 293 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
A +PV + R R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>UniRef50_O22794 Cluster: Putative splicing factor U2AF large chain;
n=2; Arabidopsis thaliana|Rep: Putative splicing factor
U2AF large chain - Arabidopsis thaliana (Mouse-ear
cress)
Length = 475
Score = 35.9 bits (79), Expect = 0.60
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLAC 457
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C
Sbjct: 206 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISC 251
>UniRef50_Q4N3F2 Cluster: U2 small nuclear ribonucleoprotein,
auxiliary factor, large subunit, putative; n=2;
Theileria|Rep: U2 small nuclear ribonucleoprotein,
auxiliary factor, large subunit, putative - Theileria
parva
Length = 380
Score = 35.9 bits (79), Expect = 0.60
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQQM--HLSGLAQAAGNP-VLACQI-NLDKNFAFLE 493
++ +RLYVGN+P G ++ ++FFN + + G +P V +I N D+ + FLE
Sbjct: 53 KRQKRLYVGNLPSGTKLQDVVDFFNGALMAMVPGNTIDPRDPLVTKTEIYNPDQGYCFLE 112
Query: 494 FRS 502
F++
Sbjct: 113 FKT 115
>UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyces
cerevisiae YNL197c; n=1; Yarrowia lipolytica|Rep:
Similarities with sp|P34761 Saccharomyces cerevisiae
YNL197c - Yarrowia lipolytica (Candida lipolytica)
Length = 625
Score = 35.9 bits (79), Expect = 0.60
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 197 TAAGIRAYHAITIQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 376
T+AG A I + + ++ + + P + LYVGN+P TE
Sbjct: 468 TSAGPGAASRIVVPYSPTNASTTIQVLQNGGRVLPPANPADQNPPCNTLYVGNLPMNTTE 527
Query: 377 EETMEFFNQQ 406
EE M+ F++Q
Sbjct: 528 EELMQLFSKQ 537
>UniRef50_A1CA44 Cluster: RNP domain protein; n=13;
Pezizomycotina|Rep: RNP domain protein - Aspergillus
clavatus
Length = 378
Score = 35.9 bits (79), Expect = 0.60
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 269 NIVADTPQAAVPVVGSTITR--QARRLYVGNIPFGVTEEETMEFF 397
N A P AA P + + RRLY+GN+ + TE E EFF
Sbjct: 22 NGTAPAPAAAQPTTDAAAASADEGRRLYIGNLAYATTEGELKEFF 66
>UniRef50_A7AU39 Cluster: RNA recognition motif (RRM)-containing
protein; n=1; Babesia bovis|Rep: RNA recognition motif
(RRM)-containing protein - Babesia bovis
Length = 383
Score = 35.5 bits (78), Expect = 0.79
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 311 GSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHL--SGLAQAAGNPVLACQ--INLDKN 478
G ++ RRLY+GN+P G T + +EF + + L Q P ++ N D+
Sbjct: 51 GDDNKKRHRRLYIGNLPSGTTYKALVEFLSAALRLPNDDSGQTVQVPHISKTEIFNEDQG 110
Query: 479 FAFLEF 496
+ FLEF
Sbjct: 111 YCFLEF 116
>UniRef50_Q57W18 Cluster: RNA-binding protein, putative; n=1;
Trypanosoma brucei|Rep: RNA-binding protein, putative -
Trypanosoma brucei
Length = 857
Score = 35.1 bits (77), Expect = 1.0
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +2
Query: 320 ITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
+ R++RR+ +GNIPF TEE+ +F + + G +A P L K AF++F
Sbjct: 310 VVRESRRIRLGNIPFIATEEDVKQFASSHV---GPVEAVHIP-LTRDTKQSKGAAFVKF- 364
Query: 500 SLVNDTGNGF*R 535
+ V D N R
Sbjct: 365 ARVEDAVNALSR 376
>UniRef50_Q7RYH6 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 1141
Score = 34.7 bits (76), Expect = 1.4
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -3
Query: 317 SNPPPARQLVVCRRQYWQESDRRLHRLVL*WRDMLESRRRYIPVKRRLTS 168
++PPP+ +LV+ RRQ Q SD + R ++ W ES R P + +LTS
Sbjct: 581 TSPPPSSKLVIARRQNMQLSDIQ-ERYLVNWYLREESLGRGAPSRAKLTS 629
>UniRef50_Q9LUK6 Cluster: Similarity to RNA-binding protein; n=3;
Arabidopsis thaliana|Rep: Similarity to RNA-binding
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 501
Score = 33.9 bits (74), Expect = 2.4
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 502
R +++GN+PF V +EE + F + +L +A + +N+ K A++ F++
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAV-RVIRDPHLNIGKGIAYVLFKT 337
>UniRef50_Q22VW0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 515
Score = 33.9 bits (74), Expect = 2.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 323 TRQARRLYVGNIPF--GVTEEETMEFFNQQMHLSGLAQAAG-NPVLACQINLDKNFAFLE 493
T + R++ + N+P G+ + + + + N M LA NPV+ C+IN + A +E
Sbjct: 269 TEKQRKIQLQNVPLELGLDKLDIISYINHFMKEKHLANDGNDNPVIDCEINEENKTANIE 328
Query: 494 FRSL 505
F S+
Sbjct: 329 FSSV 332
>UniRef50_Q22BY2 Cluster: Leishmanolysin family protein; n=10;
Tetrahymena thermophila SB210|Rep: Leishmanolysin family
protein - Tetrahymena thermophila SB210
Length = 1329
Score = 33.9 bits (74), Expect = 2.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 202 RRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGGFDYNTSSAKV 342
R D R N ++CK +C+Y + H TSC AG ++ S +V
Sbjct: 809 RTDEFEDRTGNCQKCKSPCATCKYYQEHCTSCLAGYTYNPQYKSCQV 855
>UniRef50_A7PMG0 Cluster: Chromosome chr14 scaffold_21, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_21, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 240
Score = 33.5 bits (73), Expect = 3.2
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = +1
Query: 205 RDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRN 384
++ ++ +T+ K R +CQYCR+ + +A GG +V ++ L R
Sbjct: 89 KEKTLQGKSSTKLLKERRYACQYCRKEFANSQALGGHQNAHKKERVKKKRMQLEARRASI 148
Query: 385 NGVFQSTNASIGPGPGRRQPCFGLPD 462
N QS + P +P F +P+
Sbjct: 149 NQYLQSFQSH----PRFTEPSFSIPE 170
>UniRef50_A7PJ01 Cluster: Chromosome chr13 scaffold_17, whole genome
shotgun sequence; n=3; Magnoliophyta|Rep: Chromosome
chr13 scaffold_17, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 270
Score = 33.5 bits (73), Expect = 3.2
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQ 403
R+YVGN+P+ +TE+E +FF++
Sbjct: 133 RIYVGNLPWDITEDEVRKFFSR 154
>UniRef50_Q9VHP3 Cluster: CG8021-PA; n=3; Diptera|Rep: CG8021-PA -
Drosophila melanogaster (Fruit fly)
Length = 91
Score = 33.5 bits (73), Expect = 3.2
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 308 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 487
+ S R + +L+VGN+P+ + +E +F++ H+ A V Q+ L K++ F
Sbjct: 1 MSSGFVRSSYKLFVGNLPWTIGSKELRTYFSKYGHV-----ANAEVVFDRQLGLSKHYGF 55
Query: 488 LEF--RSLVNDTGN 523
+ F R N N
Sbjct: 56 VVFSQRDAFNSASN 69
>UniRef50_Q750E5 Cluster: AGR010Cp; n=2; Saccharomycetaceae|Rep:
AGR010Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 266
Score = 33.5 bits (73), Expect = 3.2
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
R +R +Y+G+IP+ TE++ ++ + ++GL + Q K +AF+EF+ L
Sbjct: 8 RPSRTVYLGSIPYDQTEQQILDLCSNVGPVTGLKM-----MFDPQTGKSKGYAFIEFKDL 62
Query: 506 VNDT 517
+
Sbjct: 63 ATSS 66
>UniRef50_Q2U8W5 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 104
Score = 33.5 bits (73), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGL 424
+ RRLY+GN+ + TE E EFF GL
Sbjct: 45 EGRRLYIGNLAYATTEGELKEFFKNYKVFLGL 76
>UniRef50_A5DKP1 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 442
Score = 33.5 bits (73), Expect = 3.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
R ++VGN+ F EEE +FN +H ++ V + NL K FA ++F+
Sbjct: 272 RTIFVGNLDFEALEEELWRYFN--LHTDNDVESV-RVVRDSKTNLGKGFALVQFK 323
>UniRef50_A6Q9E1 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 479
Score = 33.1 bits (72), Expect = 4.2
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 182 ALLGCTAAGIRAYHAITIQGDASGGQIPANIVADTPQAAVP 304
A +G AG+ Y A +I GDASG PAN+ TP +P
Sbjct: 336 AKIGVKYAGLTVYAAYSISGDASG---PANLGTITPWGGMP 373
>UniRef50_A5GEF6 Cluster: RNP-1 like RNA-binding protein; n=1;
Geobacter uraniumreducens Rf4|Rep: RNP-1 like
RNA-binding protein - Geobacter uraniumreducens Rf4
Length = 85
Score = 33.1 bits (72), Expect = 4.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFN 400
R+L+VGN+PF TE+ EFF+
Sbjct: 3 RKLFVGNVPFTATEDHLKEFFS 24
>UniRef50_Q6ID24 Cluster: At4g12630; n=6; Arabidopsis thaliana|Rep:
At4g12630 - Arabidopsis thaliana (Mouse-ear cress)
Length = 117
Score = 33.1 bits (72), Expect = 4.2
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
+R L+VGN+P G+ E E + F + L LA G N D++ AF SL
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDED-AFAAIESL 78
>UniRef50_Q57UQ0 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 354
Score = 33.1 bits (72), Expect = 4.2
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +2
Query: 194 CTAAGIRAYHAITIQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVT 373
C A+G +A+ + +S A+ + + P G+ + R L + N+P
Sbjct: 51 CAASGFKAHSSSAGSSSSSSSSSRFTSAAEEEKMSTPSSGAKV----RALQLHNLPRSWM 106
Query: 374 EEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKN 478
EE +EF +Q +G+ Q + + +C N D N
Sbjct: 107 YEEIVEFLHQVAEHAGIEQPSYHSTASC--NSDGN 139
>UniRef50_Q4UHC8 Cluster: Splicing factor, putative; n=3;
Piroplasmida|Rep: Splicing factor, putative - Theileria
annulata
Length = 425
Score = 33.1 bits (72), Expect = 4.2
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +2
Query: 323 TRQARRLYVGNIPF--GVTEEETME-FFNQQMHLSGLAQAAGNPVLACQINLDK-NFAFL 490
TR+ RRLY GN+P G+TE +N+ + + +PVL DK N+ F+
Sbjct: 189 TRKLRRLYFGNLPVHTGLTETGFQNLIWNEMRNRNFCNDPNVSPVLYVWFAKDKGNYGFV 248
Query: 491 EFRSL 505
EF S+
Sbjct: 249 EFASV 253
>UniRef50_Q75CJ0 Cluster: ACL071Cp; n=2; Saccharomycetaceae|Rep:
ACL071Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 298
Score = 33.1 bits (72), Expect = 4.2
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 227 ITIQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQ 406
+ +G G + P V + R + LYV NIP+ T+EE EFF +
Sbjct: 116 VATRGSRRGKRFVRGQAVPAPPQREKVPLDQLERSSDTLYVNNIPYYTTKEEIAEFFGTK 175
Query: 407 MHL 415
L
Sbjct: 176 PEL 178
>UniRef50_Q9U1N0 Cluster: Hrp65 protein; n=3; Chironomus
tentans|Rep: Hrp65 protein - Chironomus tentans (Midge)
Length = 535
Score = 33.1 bits (72), Expect = 4.2
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 493
RLY+GN+ VTEEE E F+ +S IN +KNFAFL+
Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEIS-----------EAFINAEKNFAFLK 154
>UniRef50_UPI00006CBD24 Cluster: hypothetical protein
TTHERM_00151210; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00151210 - Tetrahymena
thermophila SB210
Length = 554
Score = 32.7 bits (71), Expect = 5.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPV 448
A R+Y+GNIP V E+ +F +QM +G GNP+
Sbjct: 216 ALRVYIGNIPDPVDVEDVCKFVFEQMANAGGLLEPGNPL 254
>UniRef50_UPI00006A1C5B Cluster: Uncharacterized protein C11orf56.;
n=3; Xenopus tropicalis|Rep: Uncharacterized protein
C11orf56. - Xenopus tropicalis
Length = 911
Score = 32.7 bits (71), Expect = 5.6
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 241 RCKRRSDSCQYCRR--HTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNAS 414
RC R+ + C R H T +A G +TSS + R T R G F + +
Sbjct: 462 RCCRKENLCPQDREEEHATWSKAHGSPSIDTSSVTTVPRPSTPSRM-----GFFMRQSNA 516
Query: 415 IGPGPGRRQPCFGLPD 462
P R P F LPD
Sbjct: 517 APESPSSRSPSFSLPD 532
>UniRef50_Q70JP5 Cluster: Putative DIP2 protein; n=5; BEP clade|Rep:
Putative DIP2 protein - Triticum aestivum (Wheat)
Length = 259
Score = 32.7 bits (71), Expect = 5.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQQMHL 415
+LYV N+ +GVT+E+ E F++ HL
Sbjct: 116 KLYVSNLHYGVTKEDLQELFSEMGHL 141
>UniRef50_A5KEB3 Cluster: mRNA processing protein, putative; n=1;
Plasmodium vivax|Rep: mRNA processing protein, putative
- Plasmodium vivax
Length = 721
Score = 32.7 bits (71), Expect = 5.6
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPV-LACQINLDKNFAFLEFRSL 505
L++GNIPF VTE E E LS + Q + N+ K FAF E++ L
Sbjct: 9 LWIGNIPFDVTERELHEI------LSKVGQVVSVRIKYDVDKNISKGFAFCEYKDL 58
>UniRef50_P34761 Cluster: Protein WHI3; n=2; Saccharomyces
cerevisiae|Rep: Protein WHI3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 661
Score = 32.7 bits (71), Expect = 5.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 233 IQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQ 406
I G AS Q +++A P A P + LYVGN+P TE+E + F+ Q
Sbjct: 507 ITGSASISQADLSLLARIPPPANPADQNP---PCNTLYVGNLPSDATEQELRQLFSGQ 561
>UniRef50_UPI0000F2E718 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 511
Score = 32.3 bits (70), Expect = 7.3
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 178 LRFTGMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQH 357
LR G RRR ++ K S +C C H+ SC + GG Y+TS + +
Sbjct: 127 LRARGHLRRRGCRRQSSSSSSSSKSSSCTCSSCSCHSGSCSSCGG-SYSTSGSSCLEVAV 185
Query: 358 TLW 366
LW
Sbjct: 186 PLW 188
>UniRef50_Q7ZUX2 Cluster: Cstf2 protein; n=2; Danio rerio|Rep: Cstf2
protein - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 339
Score = 32.3 bits (70), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 293 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
AA + R R ++VGNIP+ TEE+ + F++
Sbjct: 10 AAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 46
>UniRef50_Q751V3 Cluster: AFR722Cp; n=2; Saccharomycetaceae|Rep:
AFR722Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 810
Score = 32.3 bits (70), Expect = 7.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 190 GMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSC 297
GM R S H +R KRR+ SC CR+ T C
Sbjct: 78 GMREREHCSDLGHLRKQRKKRRTYSCDLCRKFKTRC 113
>UniRef50_Q6C4U4 Cluster: Similarities with tr|O13845
Schizosaccharomyces pombe Putative splicing factor; n=1;
Yarrowia lipolytica|Rep: Similarities with tr|O13845
Schizosaccharomyces pombe Putative splicing factor -
Yarrowia lipolytica (Candida lipolytica)
Length = 621
Score = 32.3 bits (70), Expect = 7.3
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFF 397
RLYVGNI FGVTE E ++ F
Sbjct: 447 RLYVGNIYFGVTEGEIIQIF 466
>UniRef50_A6SSI6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 322
Score = 32.3 bits (70), Expect = 7.3
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +2
Query: 317 TITRQARRLYVGNIPFGVTEEETMEFFN 400
+I ++ ++VGNIP+G+TEE+ ++ F+
Sbjct: 2 SIKPPSKSVFVGNIPYGLTEEQIIDIFS 29
>UniRef50_Q84W91 Cluster: Zinc finger CCCH domain-containing protein
ZFN-like 1; n=13; Magnoliophyta|Rep: Zinc finger CCCH
domain-containing protein ZFN-like 1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 468
Score = 32.3 bits (70), Expect = 7.3
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRL 343
SGG IP + + + Q+++P+ GS ITRQ R +
Sbjct: 433 SGGSIPFSELQLSSQSSLPLTGSRITRQGREI 464
>UniRef50_A0LUH9 Cluster: Prepilin-type cleavage/methylation-like;
n=1; Acidothermus cellulolyticus 11B|Rep: Prepilin-type
cleavage/methylation-like - Acidothermus cellulolyticus
(strain ATCC 43068 / 11B)
Length = 616
Score = 31.9 bits (69), Expect = 9.7
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Frame = +2
Query: 200 AAGIRAYHAITIQGDASGGQIPANIVADTPQA----AVPVVGSTITRQARRLYVGNIPFG 367
+AG A+ GD G +PAN+ A+ P + V G + + R G P
Sbjct: 433 SAGCVGSEAVRTPGDVYLGGLPANVAANAPAGWGGYLISVTGYSDAAWSERGQTGAAPKA 492
Query: 368 VTEEETMEFFNQQMHLS-GLAQAAGNPVLACQINLDKNFA 484
T+ ++N + S LA AA L + + N A
Sbjct: 493 GISSGTLRYWNGSGYTSVNLAGAAAGQQLTSSLVVSSNSA 532
>UniRef50_Q9LZ65 Cluster: Rna binding protein-like; n=7;
Magnoliophyta|Rep: Rna binding protein-like -
Arabidopsis thaliana (Mouse-ear cress)
Length = 222
Score = 31.9 bits (69), Expect = 9.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 287 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>UniRef50_Q9C5A7 Cluster: Putative uncharacterized protein
At5g08700; n=1; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At5g08700 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 768
Score = 31.9 bits (69), Expect = 9.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 215 AYHAITIQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEF 394
A + I G+ ++ + D V GS A RL+V +P+ TEEE ME
Sbjct: 217 AINVFPIDGEVKADRVDKD--DDGHAMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEH 274
Query: 395 FNQ 403
F++
Sbjct: 275 FSK 277
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 31.9 bits (69), Expect = 9.7
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 220 SRHYNTRRCKRRSDSCQYCRRHTT--SCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGV 393
SR + R R DS T + GGG D +TSSA R+ + RHR + G+
Sbjct: 11 SRSRSASRVDARVDSIARSLDRTVRRAANGGGGDDAHTSSAMSTSREPRVARHRVQQRGL 70
Query: 394 FQSTNAS 414
Q AS
Sbjct: 71 VQREIAS 77
>UniRef50_Q4DDV5 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 879
Score = 31.9 bits (69), Expect = 9.7
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Frame = +2
Query: 242 DASGGQIPANIVADTPQAAVPVVGST-------ITRQARRLYVGNIPFGVTEEETMEFFN 400
D +GG+ ++ ++T Q V S+ I +++RR+ +GNIP+ TE++ +F +
Sbjct: 287 DDAGGEQQEDVGSETRQQPSCVDDSSKKDDQEAIVQESRRIRLGNIPYIATEDDVKQFAS 346
Query: 401 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
L G +A P L K AF++F
Sbjct: 347 S---LVGSVEAVHIP-LTKDTRQSKGAAFVKF 374
>UniRef50_Q4P9P1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 404
Score = 31.9 bits (69), Expect = 9.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 337 KVICRQHTLWRHRRRNNGVFQSTNASIGPGP 429
K CR+ TL +H RRN+ + T IG GP
Sbjct: 115 KSFCRKTTLTKHTRRNHADAEGTFTGIGGGP 145
>UniRef50_A5DG12 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 345
Score = 31.9 bits (69), Expect = 9.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFF 397
R+Y+GN+ + TEEE EFF
Sbjct: 7 RIYIGNVDYNATEEELREFF 26
>UniRef50_O01159 Cluster: Probable splicing factor,
arginine/serine-rich 7; n=3; Caenorhabditis|Rep:
Probable splicing factor, arginine/serine-rich 7 -
Caenorhabditis elegans
Length = 452
Score = 31.9 bits (69), Expect = 9.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 457
R +YVGN+P GV E +E FN A+ A P L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204
>UniRef50_P10768 Cluster: S-formylglutathione hydrolase; n=136;
cellular organisms|Rep: S-formylglutathione hydrolase -
Homo sapiens (Human)
Length = 282
Score = 31.9 bits (69), Expect = 9.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 340 PSRLTCYSRTHHRHGSLWCVGDNIGRNLTAACIALYCNGVIC 215
P R++ + + HG+L C N G+ + + A CN V+C
Sbjct: 140 PQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLC 181
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,776,733
Number of Sequences: 1657284
Number of extensions: 11580577
Number of successful extensions: 33402
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 31801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33350
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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