Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1267
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.11
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.14
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.33
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.44
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.44
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.44
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 29 0.58
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 29 0.58
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 1.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.3
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 3.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 3.1
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 26 3.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 4.1
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 4.1
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 4.1
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 25 5.4
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 9.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 9.5
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 9.5
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQ 403
++VGNIP+ V+E++ E FNQ
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQ 29
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 311 GSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
G T+Q RR+YVGN+ + V E EF Q
Sbjct: 58 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQ 88
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.33
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQ 403
+YVGNIP+ + EE+ ++ F Q
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQ 27
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
LYVG +P G E++ +F+Q + L + + K++AF+EF SL
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNR-----KTGSSKHYAFIEFESL 156
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 215 AYHAITIQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEF 394
A++A+ + + P + P P G+ + R LYV NI F V E++ F
Sbjct: 719 AHNALQLHKKLLEEKYPIQVFISDPLRRTPRSGAVY--EGRELYVTNIDFKVNEKDVETF 776
Query: 395 F 397
F
Sbjct: 777 F 777
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.44
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQ 403
+++VG +P TEEE FFNQ
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQ 269
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 163 HVDVSLRFTGMYRRRDSSISRHYNTRRCKRRSDSCQY 273
H ++ R RRR R Y RCK +SC Y
Sbjct: 10 HKNIRARSCLRCRRRKVKCDRQYPCSRCKESEESCTY 46
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.58
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 199 RRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICR 351
R R SS S T + KR ++C CR+ T C AG D N + + CR
Sbjct: 6 RTRQSSSS--LLTFKRKRALEACDSCRKQKTRCLAGSVEDENRACLR--CR 52
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETME 391
R +++GN+P G+TE+E E
Sbjct: 206 RNVFLGNLPNGITEDEIRE 224
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFF 397
RL+VG IP T E+ M+FF
Sbjct: 5 RLFVGRIPPQATREDMMDFF 24
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 297 PCRWWVRL*HVKREGYMSATYPLASP 374
P RWWV H G + A Y L P
Sbjct: 550 PLRWWVFRFHSLNAGIIQAAYALCFP 575
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFF 397
A+ +YVGN+ + VT EE F
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHF 75
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 189 WDVPPPGFEHITPLQYK 239
WD+ PPG+E +T Q K
Sbjct: 135 WDIKPPGYELVTADQAK 151
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +2
Query: 293 AAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD 472
A P + +RQARRL V IP E+ + F + + + + +
Sbjct: 185 APPPPLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNVCKE 244
Query: 473 KNFAFLE 493
+NFA LE
Sbjct: 245 ENFAILE 251
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQ 403
+Q+ +YVGN+ F TEE+ F++
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSK 54
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQQM 409
+YVGN+P +EEE F+ Q+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQV 450
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.1
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 QIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFF-NQQMHLSGLAQA 433
Q P++ + T + + P V + R L++GNIP +E +F+ ++ + LSG +
Sbjct: 113 QTPSSEKSTTERESRPFVPPNSQQMRRMLFIGNIP-----KELDDFWMDKILRLSG--KL 165
Query: 434 AGNPVLACQINLDKNFAFLEFRS 502
A +A N +F F EF S
Sbjct: 166 ASWRRVADADNSMTSFGFAEFES 188
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 287 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLS 418
PQ + G I Q G+IP +EET F +HLS
Sbjct: 597 PQFFSYINGYQIYLQQTNPATGSIPLKPIQEETFGAFQSNLHLS 640
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +1
Query: 247 KRRSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQST 405
KR C CR+ C YN +K C +T H R +G F ++
Sbjct: 40 KRTKTGCLTCRKRRIKCDERKPICYNCIKSKRQCEGYT---HFPRPSGTFTAS 89
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 199 RRRDSSISRHYNTRRCKRRSDSCQY 273
RRR R RCK R++ C Y
Sbjct: 23 RRRKVKCDRQQPCSRCKERNEVCTY 47
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 302 PVVGSTITRQARRLYVGNIPFG 367
P VG+T+ A R + N+P G
Sbjct: 192 PAVGATMAGSAMRTFPSNLPLG 213
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 254 GQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEE 382
G + + DTP AAV + R+ R+ + N PF V E E
Sbjct: 311 GLVTKAVSLDTP-AAVYLYLINFHREYRKFFEENAPFSVDEVE 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,835
Number of Sequences: 5004
Number of extensions: 45063
Number of successful extensions: 140
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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