Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1267
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   8e-20
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 32   0.34 
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 31   0.60 
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   2.4  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         29   3.2  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_30621| Best HMM Match : SH3_2 (HMM E-Value=0.23)                    28   4.2  
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)            28   4.2  
SB_6369| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)           28   5.6  
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)                 28   5.6  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 27   7.4  
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_34647| Best HMM Match : COLFI (HMM E-Value=1.5e-13)                 27   7.4  
SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)                27   7.4  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 27   9.8  
SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049)                 27   9.8  
SB_3111| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)                    27   9.8  

>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
 Frame = +2

Query: 224 AITIQGDASGGQI-PANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 400
           A  +    SG  + PA+ VA  P       GS +TRQARRLYVGNIPFGVTE   +EFFN
Sbjct: 531 ATALSATQSGASVLPASAVASLPH------GSQMTRQARRLYVGNIPFGVTENLMIEFFN 584

Query: 401 QQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
            +M  + L  A GNPV+A QIN ++NFAF+E RS+   T
Sbjct: 585 AKMKEAKLNTAPGNPVIAAQINTEQNFAFIELRSVEETT 623



 Score = 33.9 bits (74), Expect = 0.085
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 189 WDVPPPGFEHITPLQYKAMQA 251
           WD+PP G+E ++ ++YK M+A
Sbjct: 496 WDIPPLGYEQVSAMEYKTMRA 516


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 266 ANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
           A  +A   QA          R  R ++VGNIP+  +EE+  E F++
Sbjct: 2   ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSE 47


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 338 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
           R+Y+G +P+G TE++   FF     L               INL  N+ F+EF
Sbjct: 4   RVYLGRLPYGTTEDDVRRFFRSYGRLR-------------DINLKNNYGFVEF 43


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 320 ITRQARRLYVGNIPFGVTEEETMEFFNQ 403
           + R+ R L+VGN+P  + EE+ ++ F +
Sbjct: 1   MVRETRHLWVGNLPENIREEDIVKHFTR 28


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 344 YVGNIPFGVTEEETMEFFNQQMHLSG 421
           ++GN+P+ V  E+ +EFF+    L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +2

Query: 251 GGQIPANIVA--DTPQAAVPVVGSTITRQARRL----YVGNIPFGVTEEETMEFFNQQMH 412
           G Q+  N  A  + P    P+V   +  Q+ +L    YVGN+P  V + E  + F+Q   
Sbjct: 581 GKQVKTNWAARKNNPTQTKPLVWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQY-- 638

Query: 413 LSGLAQAAGNPVLACQINLDKNFAFLEFR 499
                      +L  ++  DK +AF+  R
Sbjct: 639 ---------GSILETKVFADKGYAFINAR 658


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/65 (32%), Positives = 36/65 (55%)
 Frame = +2

Query: 308 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 487
           +G  I+    RL+VG+IP   +++E +E F++    +GL       + A Q   ++ FAF
Sbjct: 224 LGVCISVANSRLFVGSIPKTKSKQEILEEFSKV--TNGLDDVIVY-LSADQKGKNRGFAF 280

Query: 488 LEFRS 502
           LE+ S
Sbjct: 281 LEYES 285


>SB_30621| Best HMM Match : SH3_2 (HMM E-Value=0.23)
          Length = 391

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 238 RRCKRRSDSCQYCRRHTTSCRAGGGFDYNTSSAKV 342
           R CKRR    +YC      C+A GG+ + T+  KV
Sbjct: 239 RECKRRG-WMKYCLHFRAPCKARGGY-FRTNHVKV 271


>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
          Length = 170

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +1

Query: 274 CRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQPC 447
           C  HT  C A  G  YN       C+ +T   H    +  F    A   PG  ++ PC
Sbjct: 113 CNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGFYGNAADGTPGDCKQCPC 163


>SB_6369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 310 HHRHGSLWCVGDNIGRNLTAACIALYCNGVICSNPGGGT 194
           H +  SL CVG+ +G +      +L C G +  N G G+
Sbjct: 51  HGKISSLLCVGNGMGNDGHDKISSLLCVGSVMGNDGHGS 89


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 286 TTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQ 441
           T + R  G   +N    ++ C Q   + HR+R + V+       G G  + Q
Sbjct: 71  TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQ 122


>SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)
          Length = 443

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +1

Query: 157 NVHVDVSLRFTGMYRRR--DSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGGFDYNTS 330
           NV V V     G YR+    +S   H  T   +  S  C Y RR  T   +       +S
Sbjct: 328 NVIVCVIQVVRGRYRKTYLKNSEKTHSTTAYPQSNSTKC-YDRRVITFLDSEQRLSNQSS 386

Query: 331 SAKVICRQHTLWRHRRRNNGVFQS 402
           +   +CR   LW  + R   + QS
Sbjct: 387 NLAQVCRTGQLWNEKYREQKIDQS 410


>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
          Length = 67

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 332 ARRLYVGNIPFGVTEEETMEFF 397
           + R+Y+G +P+G  E++  +FF
Sbjct: 2   SNRVYLGRLPYGTREDDVKKFF 23


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 326 RQARRLYVGNIPFGVTEEETMEFF 397
           +Q   L+VGN+PF +T E+ ++ F
Sbjct: 71  KQRYILFVGNLPFDLTTEKVLDHF 94


>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 335 RRLYVGNIPFGVTEEETMEFFNQ 403
           ++L+VG +P   TE+  ME+F Q
Sbjct: 199 KKLFVGRLPESTTEKTLMEYFAQ 221


>SB_34647| Best HMM Match : COLFI (HMM E-Value=1.5e-13)
          Length = 143

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = +3

Query: 210 FEHITPLQYKAMQAAVRFLPILSPTHHK---LPCR----WWVRL*HVKREGYMSATYPLA 368
           FE  + + Y A Q+ + FL + S   ++     C+    W  R   +K  G     +   
Sbjct: 21  FEEESQIDYSAEQSQIAFLRVFSKRAYQNVTYNCQNYKAWTNRKHSIKLRGDNDLIFHAK 80

Query: 369 SPKKKQWSFSINKC 410
           SPKK Q +  +N+C
Sbjct: 81  SPKKFQPTVILNEC 94


>SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)
          Length = 496

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +1

Query: 199 RRRDSSISRHYNTRRCKRRSDSCQYCRRHTTS-----CRAGGGFDYNTSSAKVICRQ 354
           R R ++   H + R  KR+S++   CR+HT +       A GG     S  K IC Q
Sbjct: 259 RARHANTDAHESIRAKKRKSNNNSACRKHTCTQALRPLTANGG---RQSDKKGICAQ 312


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 338 RLYVGNIPFGVTEEETMEFFN 400
           ++++G + FG TEE+  E+F+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFS 223


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 335 RRLYVGNIPFGVTEEETMEFF 397
           R +++GN+PF + EE   E F
Sbjct: 56  RSVFIGNLPFDIEEEPLRELF 76


>SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
          Length = 960

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 154 INVHVDVSLRFTGMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAG 306
           +N+HV + +   G+Y RR    +    T   K+R+         TT+CR+G
Sbjct: 809 MNLHVRLRMSLIGLYTRRRELAAAFTRTPAVKQRATEA------TTACRSG 853


>SB_3111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 216 HITPLQYKAMQAAVRFLPILSPTHHKLPCR 305
           H+ P + +  Q +V ++P   P  H+LP R
Sbjct: 211 HVLPTKQRTRQFSVTYIPGKEPGGHELPTR 240


>SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)
          Length = 1058

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 185 LLGCTAAGIRAYHAITIQGDASGGQIPANIVAD 283
           LL CT    +    +T+  +A  G +P NI++D
Sbjct: 411 LLSCTMTSSQEPFYVTLPSNAIEGALPGNIISD 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,992
Number of Sequences: 59808
Number of extensions: 372265
Number of successful extensions: 1142
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)