Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1267
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 124 3e-29
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 124 3e-29
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 124 3e-29
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 124 3e-29
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 32 0.30
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 31 0.40
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.40
U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 31 0.40
U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical pr... 31 0.40
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 30 0.93
AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormo... 29 2.8
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 3.7
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.6
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 27 8.6
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 27 8.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 27 8.6
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 27 8.6
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 27 8.6
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 27 8.6
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 124 bits (300), Expect = 3e-29
Identities = 59/90 (65%), Positives = 70/90 (77%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE ++FFNQQMHL GLA
Sbjct: 159 AAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLA 214
Query: 428 QAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
QA GNP+L CQINLDKNFAF+EFRS+ T
Sbjct: 215 QAPGNPILLCQINLDKNFAFIEFRSIDETT 244
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
+WDVPP GFE TP++YK MQAA
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAA 160
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 124 bits (300), Expect = 3e-29
Identities = 59/90 (65%), Positives = 70/90 (77%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE ++FFNQQMHL GLA
Sbjct: 159 AAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLA 214
Query: 428 QAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
QA GNP+L CQINLDKNFAF+EFRS+ T
Sbjct: 215 QAPGNPILLCQINLDKNFAFIEFRSIDETT 244
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
+WDVPP GFE TP++YK MQAA
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAA 160
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 124 bits (300), Expect = 3e-29
Identities = 59/90 (65%), Positives = 70/90 (77%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE ++FFNQQMHL GLA
Sbjct: 134 AAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLA 189
Query: 428 QAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
QA GNP+L CQINLDKNFAF+EFRS+ T
Sbjct: 190 QAPGNPILLCQINLDKNFAFIEFRSIDETT 219
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
+WDVPP GFE TP++YK MQAA
Sbjct: 113 FWDVPPTGFETTTPMEYKNMQAA 135
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 124 bits (300), Expect = 3e-29
Identities = 59/90 (65%), Positives = 70/90 (77%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLA 427
+ GQ+P V Q+AVPVVG ++T Q+RRLYVGNIPFG EE ++FFNQQMHL GLA
Sbjct: 137 AAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLA 192
Query: 428 QAAGNPVLACQINLDKNFAFLEFRSLVNDT 517
QA GNP+L CQINLDKNFAF+EFRS+ T
Sbjct: 193 QAPGNPILLCQINLDKNFAFIEFRSIDETT 222
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 186 YWDVPPPGFEHITPLQYKAMQAA 254
+WDVPP GFE TP++YK MQAA
Sbjct: 116 FWDVPPTGFETTTPMEYKNMQAA 138
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 457
R +YVGN+P GV E +E FN A+ A P L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLAC 457
R +YVGN+P GV E +E FN A+ A P L C
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPC 204
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 31.5 bits (68), Expect = 0.40
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEF 496
+YVGN PF TEEE FF S + Q N + C + + FAF+EF
Sbjct: 7 VYVGNAPFQTTEEELGNFF------SSIGQ-INNVRIVCDRETGRPRGFAFIEF 53
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
++VGN+PF +TE+ + FF+ Q+ G +A V K FAF+ F+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI---GPVEAV-RIVRDKDTGKGKGFAFVNFK 296
>U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical
protein R08E3.4a protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.40
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 196 YRRRDSSISRHYNTRRCKRRSDSCQYCRRHT-TSCRAGGGFDYNTSSAKVICRQHTLWRH 372
+R R S + + Y R CK+R + H+ T + G GFD S + QH R
Sbjct: 151 HRMRHSGV-KPYECRFCKKRFFRKDQMQEHSMTHIKTGFGFDCPVSQCNMQFSQHNALRA 209
Query: 373 RRRNNGVFQSTN 408
STN
Sbjct: 210 HLEETHTISSTN 221
>U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical
protein R08E3.4b protein.
Length = 480
Score = 31.5 bits (68), Expect = 0.40
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 196 YRRRDSSISRHYNTRRCKRRSDSCQYCRRHT-TSCRAGGGFDYNTSSAKVICRQHTLWRH 372
+R R S + + Y R CK+R + H+ T + G GFD S + QH R
Sbjct: 151 HRMRHSGV-KPYECRFCKKRFFRKDQMQEHSMTHIKTGFGFDCPVSQCNMQFSQHNALRA 209
Query: 373 RRRNNGVFQSTN 408
STN
Sbjct: 210 HLEETHTISSTN 221
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.7 bits (66), Expect = 0.70
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 341 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
+YVGN PF TE++ +F+Q ++S + V + + FAF+EF
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNV-----RIVCDRETGRPRGFAFVEF 52
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
Q +YVGN+P+ TEEE +F H++ + V + + FAF+EF
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNV-----RIVYDRETGRPRGFAFVEF 54
>AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 76 protein.
Length = 480
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 202 RRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRA 303
RR +SR Y RR + C RRH ++CRA
Sbjct: 104 RRTVVLSRRYYCRRDPVGNSLCPLDRRHRSNCRA 137
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 166 VDVSLRFTGMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHT 288
+D S F +YR S + N C+ + D YC HT
Sbjct: 1 MDASTEFE-IYREHYSRVMASINATMCQEQPDGILYCPNHT 40
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 296 AVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
A PVVGS T +++VG +P+ +++ E+F Q
Sbjct: 23 AEPVVGSRDT-MFTKIFVGGLPYHTSDKTLHEYFEQ 57
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEE 382
R++YVGN+PF TE+E
Sbjct: 17 RQVYVGNMPFDATEKE 32
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFN 400
A+ +YVGN+ +G T EE + F+
Sbjct: 77 AKSVYVGNVDYGATAEEIEQHFH 99
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 295 CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 426
C+ G D N KVI R + RN+ V AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 295 CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 426
C+ G D N KVI R + RN+ V AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 239 GDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 400
G + GG N A T + V RL+VGN+P V E E E F+
Sbjct: 84 GRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFS 137
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 239 GDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 400
G + GG N A T + V RL+VGN+P V E E E F+
Sbjct: 84 GRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFS 137
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 239 GDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 400
G + GG N A T + V RL+VGN+P V E E E F+
Sbjct: 84 GRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFS 137
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 295 CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 426
C+ G D N KVI R + RN+ V AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 295 CRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPG 426
C+ G D N KVI R + RN+ V AS GPG
Sbjct: 1099 CKPGITVDENVELNKVILRCRAVSSGDSRNSDVIYKLTASGGPG 1142
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQ 403
R LY+ N+P+ +T EE E F +
Sbjct: 19 RILYIKNLPYKITTEEMYEIFGK 41
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,279
Number of Sequences: 27780
Number of extensions: 274326
Number of successful extensions: 759
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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