Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1267
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 247 KRRSDSCQYCR 279
           KR+ + CQYCR
Sbjct: 156 KRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 247 KRRSDSCQYCR 279
           KR+ + CQYCR
Sbjct: 156 KRQRNRCQYCR 166


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 172 VSLRFTGMYRRRDSSISRHYNTR 240
           + LR    Y  + S +SRHY+TR
Sbjct: 286 LDLRSQLEYDLQTSIMSRHYSTR 308


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/50 (20%), Positives = 20/50 (40%)
 Frame = +1

Query: 187 TGMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGGFDYNTSSA 336
           T  Y    + + +H  T   K + +  +    H  +C+      + TSS+
Sbjct: 369 TSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSS 418


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 320 ITRQARRLYVGNIPFGVTEEETMEFFN 400
           ITR    L V   P   TE E   FF+
Sbjct: 482 ITRDISSLVVQEQPTPTTESEERRFFS 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,561
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)