Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1267
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 54 8e-08
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 46 1e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 46 1e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 46 1e-05
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 46 1e-05
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 34 0.070
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.12
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 32 0.21
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.28
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 31 0.65
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 30 0.86
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 29 1.5
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 29 1.5
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 1.5
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 1.5
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 1.5
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.0
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.0
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.0
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 29 2.0
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 2.6
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 2.6
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 2.6
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 29 2.6
At5g07180.1 68418.m00818 leucine-rich repeat family protein / pr... 28 3.5
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 3.5
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 28 3.5
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 3.5
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 28 3.5
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 28 3.5
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 28 3.5
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.5
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.5
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 3.5
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 4.6
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 4.6
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 28 4.6
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 6.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 27 6.1
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 27 6.1
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 27 6.1
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 27 6.1
At1g61490.1 68414.m06928 S-locus protein kinase, putative simila... 27 6.1
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 27 8.0
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /... 27 8.0
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 27 8.0
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 8.0
At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein ... 27 8.0
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 53.6 bits (123), Expect = 8e-08
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 IPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAA 436
+P + P V + TR ARR+YVG +P E+ FF+Q M + G
Sbjct: 230 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGP 289
Query: 437 GNPVLACQINLDKNFAFLEFRSL 505
G+ V+ IN +K FAF+E RS+
Sbjct: 290 GDAVVNVYINHEKKFAFVEMRSV 312
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 500 SL 505
S+
Sbjct: 295 SV 296
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 500 SL 505
S+
Sbjct: 295 SV 296
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQINLDKNFAFLEFR 499
TR ARR+YVG + E+ FF+Q M + G G+ V+ IN +K FAF+E R
Sbjct: 235 TRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMR 294
Query: 500 SL 505
S+
Sbjct: 295 SV 296
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGN-PVLACQINLDKNFAFLEF 496
TR+ RRLY N+P +E+ +E FN M SG G+ P ++C IN +K+ A +EF
Sbjct: 874 TRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEF 932
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 33.9 bits (74), Expect = 0.070
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRS 502
R +++GN+PF V +EE + F + +L +A + +N+ K A++ F++
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAV-RVIRDPHLNIGKGIAYVLFKT 337
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
+R L+VGN+P G+ E E + F + L LA G N D++ AF SL
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDED-AFAAIESL 78
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 248 SGGQIPANIVADTPQAAVPVVGSTITRQARRL 343
SGG IP + + + Q+++P+ GS ITRQ R +
Sbjct: 433 SGGSIPFSELQLSSQSSLPLTGSRITRQGREI 464
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 287 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 30.7 bits (66), Expect = 0.65
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 338 RLYVGNIPF-GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSLVND 514
RLY G++ G E + + Q +SGL +A G +AC+ L + FL+ V
Sbjct: 451 RLYSGDLHLLGPRSESLLFMISLQEEVSGLKEALGTLEVACK-KLRNSRLFLKLLEAVLK 509
Query: 515 TGN 523
TGN
Sbjct: 510 TGN 512
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFN 400
RL+V N+P+ TEEE ME F+
Sbjct: 262 RLFVRNLPYTATEEELMEHFS 282
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
AR +YVGN+ + T EE Q+H +L + K FA++EF
Sbjct: 88 ARSVYVGNVDYACTPEEV------QLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
AR +YVGN+ + T EE Q+H +L + K FA++EF
Sbjct: 88 ARSVYVGNVDYACTPEEV------QLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 290 QAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
Q AV GS+I +LY+ N+ +GV+ E+ E F++
Sbjct: 94 QTAVVGGGSSI-ETGTKLYISNLDYGVSNEDIKELFSE 130
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQ 403
RLYVGN+P+ +T E + F +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGE 138
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQ 403
R LY+ N+PF +T E+T + F +
Sbjct: 20 RLLYICNLPFSITSEDTYDLFGR 42
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFNQ 403
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFNQ 403
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFNQ 403
+ ++++VG +P +TEEE +F+Q
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQ 132
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEF 496
+R +YVGN+ + T EE Q H +L + K FA++EF
Sbjct: 102 SRSIYVGNVDYACTPEEV------QQHFQSCGTVNRVTILTDKFGQPKGFAYVEF 150
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 335 RRLYVGNIPFGVTEEETMEFFNQ 403
R LYV N+PF +T EE + F +
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGK 41
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQ 403
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQ 403
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSK 29
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 96 NVFFLGIETFVGGLYLPPSYFRKYV 22
NVF L ++T V + PP +F +YV
Sbjct: 421 NVFLLSLKTMVYSIRRPPQHFEEYV 445
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 96 NVFFLGIETFVGGLYLPPSYFRKYV 22
NVF L ++T V + PP +F +YV
Sbjct: 1041 NVFLLSLKTMVYSMRKPPQHFEEYV 1065
>At5g07180.1 68418.m00818 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 932
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 224 AITIQGDASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFN 400
+I +QG+ GGQIP I A V + L G+IPF +++ + +EF N
Sbjct: 66 SIDLQGNKLGGQIPDEIGNCVSLAYVDF--------STNLLFGDIPFSISKLKQLEFLN 116
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQ 403
RQ +++VGN+P + + E EFF Q
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQ 187
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFF 397
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFF 397
+ ++++VG IP VTE+E +FF
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFF 129
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 257 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 361
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 257 QIPANIVADTPQAAVP--VVGSTITRQARRLYVGNIP 361
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 184 FTGMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRA 303
++ YRRRD S R Y+ R C+ R S Y RR+ + R+
Sbjct: 246 YSPYYRRRDRS--RSYS-RNCRARDRSPYYMRRYRSRSRS 282
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQ 403
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQ 403
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 323 TRQARRLYVGNIPFGVTEEETMEFFNQ 403
+R +R +YVGN+P + E E + F++
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSK 29
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 326 RQARRLYVGNIPFGVTEEETMEFFNQ 403
R + +Y+GN+ F TEE+ E F++
Sbjct: 31 RASTTVYIGNVSFYTTEEQLYELFSR 56
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEE 382
ARR+Y+GNIP VT E+
Sbjct: 75 ARRVYIGNIPRTVTNEQ 91
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETME 391
Q R ++VGNIP+ TEE+ E
Sbjct: 7 QRRCVFVGNIPYDATEEQLRE 27
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFNQ 403
+ ++++VG IP V ++E EFF Q
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQ 152
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQQ 406
RLYVGN+ +GV + FN+Q
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQ 272
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFFNQQ 406
RLYVGN+ +GV + FN+Q
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQ 280
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 332 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSL 505
ARRLYVGN+ ++E++ + F + L Q + C K F F++F L
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVF-ESFGSVELVQVPRDETGLC-----KGFGFVQFARL 335
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 280 GDNIGRNLTAACIALYCNGVICSNPGGGT 194
G+ IGRN + L+C C++P G T
Sbjct: 922 GEGIGRNEENMTVELHCEPDTCTSPDGHT 950
>At1g61490.1 68414.m06928 S-locus protein kinase, putative similar
to KI domain interacting kinase 1 [Zea mays]
gi|2735017|gb|AAB93834; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 804
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 304 RHGSLWCVGDNIGRNLTAACIALYCNGVICSNPGGGT 194
+HG +W +G+N N + A + N V+ N G T
Sbjct: 103 KHGVVWSIGENFASNGSRAELTDNGNLVVIDNASGRT 139
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 329 QARRLYVGNIPFGVTEEETMEFFN 400
Q R + VGN+ G TE + EFF+
Sbjct: 4 QVRSVKVGNLSSGATEHDIKEFFS 27
>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 475
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 339 GYMSATYPLASPKKKQWSFSINKCIYR 419
GY S +PL+ P+ Q SI +C YR
Sbjct: 449 GYASDVFPLSCPQLLQKKGSIAQCSYR 475
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 242 DASGGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 403
D +G + N A P+ + P + A R+YVGN+P+ V + F++
Sbjct: 215 DLNGRLLTVNKAA--PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 338 RLYVGNIPFGVTEEETMEFF 397
+LYVG IP+ TE+E +F
Sbjct: 162 KLYVGGIPYQSTEDEIRSYF 181
>At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein
(ZFP7) identical to zinc finger protein, ZFP7
gi|790685|gb|AAA87303; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 209
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +1
Query: 139 DQDRPINVHVDVSLRFTGMYRRRDSSISRHYNTRRCKRRSDSCQYCRRHTTSCRAGGG 312
D +P + HV + L+ + S N R SC YCRR S +A GG
Sbjct: 24 DLSKPESNHVSLDLKLNDTFNDDTKSTKCEANPRVF-----SCNYCRRKFYSSQALGG 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,951,742
Number of Sequences: 28952
Number of extensions: 253539
Number of successful extensions: 702
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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