Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1266
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   0.88 
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.7  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   4.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.2  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 33  HYIRLYFKSCLVYL*LLMTYFNFIISDVII 122
           H   +YFKSC + L LL  YF FIIS +++
Sbjct: 889 HVYWMYFKSCSIGLILL--YFFFIISGIMM 916


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 83  YDIFQFHNIRRHNFFFVQISLYFEF 157
           +DI  F N++ HN F+  + L + F
Sbjct: 125 FDILSFSNVKNHNRFYAHVFLSWLF 149


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 189 LNTDWINFNKLKTMCAY 239
           +NT WI FN+ +T+ AY
Sbjct: 821 INTSWIMFNRPETLTAY 837


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 311 IDVKNSFLFKEFYYILESLQHSTFFFTYQRLKGK 412
           +D KN F  + F  +LE L HST    Y +   K
Sbjct: 318 VDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKK 351


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 21  NRIAHYIRLYFKSCLVYL*LLMTYFNFIISDVIIFFLFRYLCILSFHQGS 170
           N ++H + ++  SC ++  +L    NF  S++ +FF   +  IL     S
Sbjct: 457 NVVSHVLPVFEISCEIFWLILSELKNFFKSELEVFFTEIFFPILEMRTSS 506


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 571  FRYFNFKLVYCKVNALSLSHICLSSVDM 654
            F+ FN    Y  +N L  SH C + +D+
Sbjct: 3173 FQRFNIHKSYGSLNRLPQSHTCFNQLDL 3200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,486
Number of Sequences: 5004
Number of extensions: 49687
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)