Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1266
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0764 + 20417562-20417729,20417981-20418071,20418175-204182...    30   1.6  
03_01_0139 - 1099805-1099897,1100637-1100714,1100790-1100843,110...    28   6.5  

>10_08_0764 +
           20417562-20417729,20417981-20418071,20418175-20418227,
           20418259-20418417,20418493-20418564,20419186-20419258,
           20419642-20419687,20420173-20420236,20420321-20420374,
           20420430-20420540,20420924-20421016
          Length = 327

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 251 HNQLNYFMSLCFYGLSK*TDIDVKNSFLFKEFYYIL-ESLQHSTFFFTYQRLKGKR 415
           + +L+  + +C     K  D+DV N  +   FYY+L E +  +   F  ++L  KR
Sbjct: 263 NTKLSLVLQMCLNTFDKAADLDVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKR 318


>03_01_0139 -
           1099805-1099897,1100637-1100714,1100790-1100843,
           1100926-1100989,1101232-1101277,1101555-1101627,
           1102199-1102270,1102349-1102441,1102539-1102591,
           1102684-1102774,1103039-1103167
          Length = 281

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 278 LCFYGLSK*TDIDVKNSFLFKEFYYIL-ESLQHSTFFFTYQRLKGKR 415
           +C     K  D+DV N  +   FYY+L E +  +   F  ++L  KR
Sbjct: 226 MCLNAFDKEADLDVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKR 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,965
Number of Sequences: 37544
Number of extensions: 225625
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)